Report for Sequence Feature Glyma15g04000
Feature Type: gene_model
Chromosome: Gm15
Start: 2804017
stop: 2808545
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g04000
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G59210 AT
Annotation by Michelle Graham. TAIR10: myosin heavy chain-related | chr5:23890802-23893619 REVERSE LENGTH=434
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0030244 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process
SoyBase N/A ISS
GO:0048193 GO-bp
Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport
SoyBase N/A ISS
PTHR10918 Panther
HOMER
JGI ISS
PTHR10918:SF8 Panther
OS03G0268100 PROTEIN
JGI ISS
UniRef100_I1MDC1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MDC1_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q2HS23 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: T-snare n=1 Tax=Medicago truncatula RepID=Q2HS23_MEDTR
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g04000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma15g04000
Paralog Evidence Comments
Glyma13g41400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g04000 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g035200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g04000
Coding sequences of Glyma15g04000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g04000.1 sequence type=CDS gene model=Glyma15g04000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAGCGCGCCATGCAACTCTTGGTCGACGAACGTTGGAGGAAATTCGGCAAAAGAGGGCCGCGGAGAGATTGAGTAAAACCTCTTCGGGACCAGATCTCACGCAGGTTCCCAGCACCTCCGAGATTGCGGGAATGAGCAAGTCCGAGAGCGCAAATAAGCTCTCTGAGACAGATCTTAGTGCTCTATTGTCTCAATTGAAAGGACTGCAAAAGAAGAACACGGAGTTGGAGGAAGAAAACACAAAAATTAGTTTAAAGCTTCAAACGATGGAAATTGATAATGAGACAATGCACAAGCAATTAAATGATGTGGAACAAAATACAGTGCCATCTCTAAGGAAAGCTCTGAGGGATGTCGCAATGGAGAAAGATGCTGCAGTTGTTGCACGGGAGGACCTTTCAGCACAGCTTCGTACCCTGAAGAAACGTCTTAAGGAAGCAGAAGATGAGCAATATCGTGCCGAGGAAGATGCAGCAGCGTTGAGAGCAGAATTGAACTCAATTCAGCAACAAGCAATGACTAATACAGTTAGCACAATTTCATCATTTGGTAATCCACCCGATCATTTTCAAATTCAAAGATTACAAAAGGAGCTAGATGATTTAAAACTGGAACTGCAGCGAGAATCACTTTTGAGGCACCAGGAGCAGGAACAATTAGCAAAAGAGCAAGCCTGCATTGCCTCACTGATATCTGAAAAGCAGGAGTTGGAAGAGAAACTCATGTCCATATCTAGAGAGCCTGCAGAAGCCTCAGATAAAGCTGCTCACAAAGCATTTTCTTTGGAAGACAAGCAGAAACTTGATAGGCAGTTGTATGATATGGCTATAGCCATTGAGAGGTTGGAAAGCAGTAGGCAGAAACTTCTAATGGAGATTGACTCACAATCTACAGAAATAGAGAGGCTTTTTGAGGAAAATTCTAGTCTCTCAAATTCATACCAAGAGGCAATTGGAGCAGCAGCGAGATGGGAAAACCAGGTGATGGATTGTCTTAAGCAAAATGAAGAGCTTCGTGGGATTCTAGATAATTTGAGAATGGAACTGGCTAGGGGTTTGCCAGACTCTTCTAAAAATGGGGCACATGAGATTGCTTCCTTGGCATCTATGAAGGGCCAACTTGTGACAGAACAGAGCAGAGCAGAGGCGCTATCTGCAGAAGTCATGCAGCTTTCTGCTCAACTTGAACAAGTCAAACAAGCATATGATGGTCTTGCACGCTTCTATAGGCCAGTGCTGCGCAACATTGAAAGCAATCTCATAAAAATGAAGCAAGACAACTCGTTGGCTGTACGATGA
Predicted protein sequences of Glyma15g04000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g04000.1 sequence type=predicted peptide gene model=Glyma15g04000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEARHATLGRRTLEEIRQKRAAERLSKTSSGPDLTQVPSTSEIAGMSKSESANKLSETDLSALLSQLKGLQKKNTELEEENTKISLKLQTMEIDNETMHKQLNDVEQNTVPSLRKALRDVAMEKDAAVVAREDLSAQLRTLKKRLKEAEDEQYRAEEDAAALRAELNSIQQQAMTNTVSTISSFGNPPDHFQIQRLQKELDDLKLELQRESLLRHQEQEQLAKEQACIASLISEKQELEEKLMSISREPAEASDKAAHKAFSLEDKQKLDRQLYDMAIAIERLESSRQKLLMEIDSQSTEIERLFEENSSLSNSYQEAIGAAARWENQVMDCLKQNEELRGILDNLRMELARGLPDSSKNGAHEIASLASMKGQLVTEQSRAEALSAEVMQLSAQLEQVKQAYDGLARFYRPVLRNIESNLIKMKQDNSLAVR*