SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research



Report for Sequence Feature Glyma15g03966

Feature Type:gene_model
Chromosome:Gm15
Start:2790242
stop:2794228
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G59050AT Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:23839494-23842519 REVERSE LENGTH=312 SoyBaseE_val: 5.00E-17ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1M4Z7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M4Z7_SOYBN SoyBaseE_val: 1.00E-159ISS
UniRef100_Q2HS22UniRef Annotation by Michelle Graham. Most informative UniRef hit: IMP dehydrogenase/GMP reductase, putative n=1 Tax=Medicago truncatula RepID=Q2HS22_MEDTR SoyBaseE_val: 3.00E-64ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g03966 not represented in the dataset

Glyma15g03966 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g41430 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g034900 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma15g03966.1   sequence type=CDS   gene model=Glyma15g03966   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGTTGAACTACACACTTCGCTTCCTTCTCACTTATTCCCCGACGACAACCACGACGTCGTTTCGTCACAGCATAACCACAAAGACGACATCCACCACGCCTCAGCTTTAAACCCGCTCCCCGAGCTTCCCATGAAGGACAACGACGACGATTTCATCTCCGAGTTAACTCACCGCATGGCTCGCTTTTTGCTTCCAGATGACGACACTTTCGATTTCTCTTCCATCGATCTTGATTCGTCACGGGACTCAAAACAGGGGAGTCCAGAAGGTTCATCTCAGGAGGCATCAGCGCCAGCTACACCTGAAGAGTGTTGTTGGAAGAGCAGCTACGACATGTTTGGAACGGTTGAGGAGATGAAGCTTAACGAAACAGGAAATTCCAACAACAAGCTTCTTCGTAGCTCCAATATTGAACTCTATTCTTACCAATCTCTAATTCAGGAACAGATTCGAGCCATTGAAATGTCTGGGGTGAAGCCAGAGCATGTGGTGGTGTCTCCGAAGCGGAAACCCAGTACGCGTAGAGCGCAGACATACGAGGCCAAGAAAGGAAACGGACGGAGGGCCCGTCCGTCACGACCCGGCCCACAGCAAGGCGGTGCGGGGATGCGGGTCCTGTTTCTGAAAGGGCCCGGTTCTAGAGCTGGGACTGGCGTCTTCTTGCCGCGTGGTGATGTAGCCACTACCCCATCCGATTCAACCAACAAACAAGGTAAAGGTTGCTCCACTGTTCTTATACCTGCCAGAGTTGTCCAGGCTTTGCAACTCCACTTCGACCAAATGGCTGCCACGTCTGGGCCCAAAGCCGGTGGCTTCCCTCCTCTTCATGATGTTCTAGTGAGTAACAGGGATGGAATGTATTCACTTCAGAAGCCCCGGTCACAGAACGCGCCGGCAAGTATCCAGAATGATACGATTCTGCCTCAAGAGTGGACGTATTGA

>Glyma15g03966.1   sequence type=predicted peptide   gene model=Glyma15g03966   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVELHTSLPSHLFPDDNHDVVSSQHNHKDDIHHASALNPLPELPMKDNDDDFISELTHRMARFLLPDDDTFDFSSIDLDSSRDSKQGSPEGSSQEASAPATPEECCWKSSYDMFGTVEEMKLNETGNSNNKLLRSSNIELYSYQSLIQEQIRAIEMSGVKPEHVVVSPKRKPSTRRAQTYEAKKGNGRRARPSRPGPQQGGAGMRVLFLKGPGSRAGTGVFLPRGDVATTPSDSTNKQGKGCSTVLIPARVVQALQLHFDQMAATSGPKAGGFPPLHDVLVSNRDGMYSLQKPRSQNAPASIQNDTILPQEWTY*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo