Report for Sequence Feature Glyma15g03966
Feature Type: gene_model
Chromosome: Gm15
Start: 2790242
stop: 2794228
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g03966
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G59050 AT
Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:23839494-23842519 REVERSE LENGTH=312
SoyBase E_val: 5.00E-17 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_I1M4Z7 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M4Z7_SOYBN
SoyBase E_val: 1.00E-159 ISS
UniRef100_Q2HS22 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: IMP dehydrogenase/GMP reductase, putative n=1 Tax=Medicago truncatula RepID=Q2HS22_MEDTR
SoyBase E_val: 3.00E-64 ISS
Expression Patterns of Glyma15g03966
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma15g03966
Paralog Evidence Comments
Glyma13g41430 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g03966 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g034900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g03966
Coding sequences of Glyma15g03966
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g03966.1 sequence type=CDS gene model=Glyma15g03966 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTGTTGAACTACACACTTCGCTTCCTTCTCACTTATTCCCCGACGACAACCACGACGTCGTTTCGTCACAGCATAACCACAAAGACGACATCCACCACGCCTCAGCTTTAAACCCGCTCCCCGAGCTTCCCATGAAGGACAACGACGACGATTTCATCTCCGAGTTAACTCACCGCATGGCTCGCTTTTTGCTTCCAGATGACGACACTTTCGATTTCTCTTCCATCGATCTTGATTCGTCACGGGACTCAAAACAGGGGAGTCCAGAAGGTTCATCTCAGGAGGCATCAGCGCCAGCTACACCTGAAGAGTGTTGTTGGAAGAGCAGCTACGACATGTTTGGAACGGTTGAGGAGATGAAGCTTAACGAAACAGGAAATTCCAACAACAAGCTTCTTCGTAGCTCCAATATTGAACTCTATTCTTACCAATCTCTAATTCAGGAACAGATTCGAGCCATTGAAATGTCTGGGGTGAAGCCAGAGCATGTGGTGGTGTCTCCGAAGCGGAAACCCAGTACGCGTAGAGCGCAGACATACGAGGCCAAGAAAGGAAACGGACGGAGGGCCCGTCCGTCACGACCCGGCCCACAGCAAGGCGGTGCGGGGATGCGGGTCCTGTTTCTGAAAGGGCCCGGTTCTAGAGCTGGGACTGGCGTCTTCTTGCCGCGTGGTGATGTAGCCACTACCCCATCCGATTCAACCAACAAACAAGGTAAAGGTTGCTCCACTGTTCTTATACCTGCCAGAGTTGTCCAGGCTTTGCAACTCCACTTCGACCAAATGGCTGCCACGTCTGGGCCCAAAGCCGGTGGCTTCCCTCCTCTTCATGATGTTCTAGTGAGTAACAGGGATGGAATGTATTCACTTCAGAAGCCCCGGTCACAGAACGCGCCGGCAAGTATCCAGAATGATACGATTCTGCCTCAAGAGTGGACGTATTGA
Predicted protein sequences of Glyma15g03966
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g03966.1 sequence type=predicted peptide gene model=Glyma15g03966 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAVELHTSLPSHLFPDDNHDVVSSQHNHKDDIHHASALNPLPELPMKDNDDDFISELTHRMARFLLPDDDTFDFSSIDLDSSRDSKQGSPEGSSQEASAPATPEECCWKSSYDMFGTVEEMKLNETGNSNNKLLRSSNIELYSYQSLIQEQIRAIEMSGVKPEHVVVSPKRKPSTRRAQTYEAKKGNGRRARPSRPGPQQGGAGMRVLFLKGPGSRAGTGVFLPRGDVATTPSDSTNKQGKGCSTVLIPARVVQALQLHFDQMAATSGPKAGGFPPLHDVLVSNRDGMYSLQKPRSQNAPASIQNDTILPQEWTY*