SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G29530 | AT | Annotation by Michelle Graham. TAIR10: Tim10/DDP family zinc finger protein | chr2:12641026-12642243 REVERSE LENGTH=83 | SoyBase | E_val: 6.00E-41 | ISS |
| GO:0001510 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA methylation | SoyBase | N/A | ISS |
| GO:0006626 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion | SoyBase | N/A | ISS |
| GO:0009853 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photorespiration | SoyBase | N/A | ISS |
| GO:0045039 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into mitochondrial inner membrane | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005743 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane | SoyBase | N/A | ISS |
| GO:0005758 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial intermembrane space | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0042719 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial intermembrane space protein transporter complex | SoyBase | N/A | ISS |
| GO:0015450 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | SoyBase | N/A | ISS |
| KOG3480 | KOG | Mitochondrial import inner membrane translocase, subunits TIM10/TIM12 | JGI | ISS | |
| PTHR11038 | Panther | MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM10 | JGI | ISS | |
| PTHR11038:SF11 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF02953 | PFAM | Tim10/DDP family zinc finger | JGI | ISS | |
| UniRef100_G7IRZ4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial import inner membrane translocase subunit Tim10 n=1 Tax=Medicago truncatula RepID=G7IRZ4_MEDTR | SoyBase | E_val: 7.00E-46 | ISS |
| UniRef100_I1MDB5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MDB5_SOYBN | SoyBase | E_val: 2.00E-56 | ISS |
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Glyma15g03940 not represented in the dataset |
Glyma15g03940 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g41450 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g034700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g03940.2 sequence type=transcript gene model=Glyma15g03940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAATAAAAAATTATGTACTAAGTATGTTATTTAGACAAATAAATTCAAAATTTTGTATAATTGTAGCAACAATTTTGGTGAAGTTTTATTGGGTAGTTAAGACCTGGCCTTCTTCCTTTTGAAATTTCTTTTGTGAAACCTAGCCAGCCAGCGATTGCCGCCATTTGCTTCTCCTCCGAACGATCCAACAATTCAACGGCCCTGTGTTTGTTAATTGAGATTTTAGATTCAACGCTTTAACATTGGTACAATGGCTTCCAACATCTCACCTTCTGCCTTTGATAAAGAGCAGATATTTGGAATGGCTGAAAAGGAGATGGAGTATCGGGTTGAATTATTCAACAAGATGACCCAGACATGTTTCAATAAGTGTGTTGACAATAGGTACAAGGAATCCGAGCTAAATATGGGTGAAAATAGTTGCATTGACCGCTGTGTTTCAAAATACTGGCATGTGACTAATCTAATTGGTCAGCTGCTTGGTTCTGGGAAGCCTGCAATGTAATCCAAGTGTACTGTTGTGTTTCCTTTTGCGGTTAGCAAGCTGTGAGCTACATCTACGATATTGTTAGTTGCTTCCACAACTAAGGAAGCGTAAATACTTTGCAATGTCTTTATTTTTGTCCACGACTATTTTGAGGTTTATCGGTTTTGTTAGGAAAGGAATTGATTTTGAGCTTTTGAGGTAGAGCCAATGGTGAACAATAAAACTAGTTTTAGTCAATTAAGTTCATTCTTCGTTTCTAATCATGATTTTTTGGTTATACTTATACCCCTAGTTTATCGTAGTTTTTTTCTTTAGCATCTTGCAACCGCATTGCCCTTTATCCCTATGCGACATTATGCGGTTAGGATTTTTTCTCCACTTGATTATCACCAAATATCTAAC
>Glyma15g03940.1 sequence type=CDS gene model=Glyma15g03940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCCAACATCTCACCTTCTGCCTTTGATAAAGAGCAGATATTTGGAATGGCTGAAAAGGAGATGGAGTATCGGGTTGAATTATTCAACAAGATGACCCAGACATGTTTCAATAAGTGTGTTGACAATAGGTACAAGGAATCCGAGCTAAATATGGGTGAAAATAGTTGCATTGACCGCTGTGTTTCAAAATACTGGCATGTGACTAATCTAATTGGTCAGCTGCTTGGTTCTGGGAAGCCTGCAATGTAA >Glyma15g03940.2 sequence type=CDS gene model=Glyma15g03940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCCAACATCTCACCTTCTGCCTTTGATAAAGAGCAGATATTTGGAATGGCTGAAAAGGAGATGGAGTATCGGGTTGAATTATTCAACAAGATGACCCAGACATGTTTCAATAAGTGTGTTGACAATAGGTACAAGGAATCCGAGCTAAATATGGGTGAAAATAGTTGCATTGACCGCTGTGTTTCAAAATACTGGCATGTGACTAATCTAATTGGTCAGCTGCTTGGTTCTGGGAAGCCTGCAATGTAA
>Glyma15g03940.1 sequence type=predicted peptide gene model=Glyma15g03940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASNISPSAFDKEQIFGMAEKEMEYRVELFNKMTQTCFNKCVDNRYKESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGKPAM* >Glyma15g03940.2 sequence type=predicted peptide gene model=Glyma15g03940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASNISPSAFDKEQIFGMAEKEMEYRVELFNKMTQTCFNKCVDNRYKESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGKPAM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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