SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G12870 | AT | Annotation by Michelle Graham. TAIR10: myb domain protein 46 | chr5:4062939-4064939 REVERSE LENGTH=280 | SoyBase | E_val: 2.00E-78 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009751 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus | SoyBase | N/A | ISS |
| GO:0009832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis | SoyBase | N/A | ISS |
| GO:0009834 | GO-bp | Annotation by Michelle Graham. GO Biological Process: secondary cell wall biogenesis | SoyBase | N/A | ISS |
| GO:0010413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process | SoyBase | N/A | ISS |
| GO:0045492 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:1901348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of secondary cell wall biogenesis | SoyBase | N/A | ISS |
| GO:2000652 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of secondary cell wall biogenesis | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| KOG0048 | KOG | Transcription factor, Myb superfamily | JGI | ISS | |
| PTHR10641 | Panther | MYB-RELATED | JGI | ISS | |
| PF00249 | PFAM | Myb-like DNA-binding domain | JGI | ISS | |
| UniRef100_G7IS01 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: MYB transcription factor n=1 Tax=Medicago truncatula RepID=G7IS01_MEDTR | SoyBase | E_val: 1.00E-106 | ISS |
| UniRef100_I1MDB3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MDB3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma15g03920 not represented in the dataset |
Glyma15g03920 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g41470 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g034500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g03920.1 sequence type=CDS gene model=Glyma15g03920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGGAAGCCAGAGGCGAGTAATAATAATACTAAAAACAACAACAACAATAGCAAGAAGCTTAGAAAGGGGTTGTGGTCACCTGAAGAAGATGACAAGCTCATGAACTACATGCTAAACCATGGACAAGGGTGTTGGAGCGATGTGGCAAGAAATGCTGGCCTCCAAAGGTGTGGCAAAAGTTGTCGCCTTCGATGGATCAATTACTTGAGGCCTGATCTTAAGAGAGGTGCATTCTCACCCCAAGAAGAGGAACTCATCATCCACTTCCATTCCCTTCTTGGAAACAGATGGTCTCAAATAGCGGCGCGTTTGCCTGGGCGAACCGACAATGAAATAAAAAACTTTTGGAATTCGACGATAAAGAAAAGACTCAGGAATATGTCTTCCACGACCACCACAACCTCACCCTCACCCTCATCAAATGCAAGCGAGACCTCAATATCCGAGCCTAGTAATAAAGACCTCAACATGGGAGGGTTTATTTCCACACAACATAATCAACACGCAGGCTTTGTTCCTATGTTCGGTTCATCTCCATCACCATCAATAATGCAAACCGGTACAGTTTTCAATACCTTGATTGACAGATTGCCTATGCTGGAGCATGGACTAAACATGCCAGCTTCTGGAGGGTACTTCGAAGGCACAGGTATTCCTTGCTTTTCGCAAAGTGAAGTTAACAAATTAGGTTCTTGTTATTTAGAAAACGGAGTATTTGGGAGAAGTGTAAATATCGGGGTAGAAGGGGATATGTTTGTTCCTCCCCTAGAGAATGCTACATGCAGCAGGAGAGAAACAACTAACAGCAGTTACTTTGACGATGACATAAATAGTATTCTTAATAACTGCAACATTGGCATAGGTGAAAATAAGGCTCATGATGGGGTGGAGAATTTGTTTCAACAAGAGTTAGCCACTGCCACTGCCACAGGAGAATGGGACTTTGAGGAGTTGATGAAATTAGATGTTTCCTCCTTTCCGTTTCTTGATTTTTCATACTGA
>Glyma15g03920.1 sequence type=predicted peptide gene model=Glyma15g03920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRKPEASNNNTKNNNNNSKKLRKGLWSPEEDDKLMNYMLNHGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHFHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLRNMSSTTTTTSPSPSSNASETSISEPSNKDLNMGGFISTQHNQHAGFVPMFGSSPSPSIMQTGTVFNTLIDRLPMLEHGLNMPASGGYFEGTGIPCFSQSEVNKLGSCYLENGVFGRSVNIGVEGDMFVPPLENATCSRRETTNSSYFDDDINSILNNCNIGIGENKAHDGVENLFQQELATATATGEWDFEELMKLDVSSFPFLDFSY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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