SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G14700 | AT | Annotation by Michelle Graham. TAIR10: origin recognition complex 1 | chr4:8422236-8424665 FORWARD LENGTH=809 | SoyBase | E_val: 0 | ISS |
| GO:0006260 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA replication | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0000808 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: origin recognition complex | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0010385 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: double-stranded methylated DNA binding | SoyBase | N/A | ISS |
| GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
| KOG1514 | KOG | Origin recognition complex, subunit 1, and related proteins | JGI | ISS | |
| PTHR10763 | Panther | ORIGIN OF REPLICATION BINDING PROTEIN | JGI | ISS | |
| PTHR10763:SF6 | Panther | ORIGIN RECOGNITION COMPLEX SUBUNIT 1 | JGI | ISS | |
| PF00004 | PFAM | ATPase family associated with various cellular activities (AAA) | JGI | ISS | |
| PF00628 | PFAM | PHD-finger | JGI | ISS | |
| PF01426 | PFAM | BAH domain | JGI | ISS | |
| UniRef100_B9RIC0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Origin recognition complex subunit, putative n=1 Tax=Ricinus communis RepID=B9RIC0_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233B8DE | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233B8DE related cluster n=1 Tax=unknown RepID=UPI000233B8DE | SoyBase | E_val: 0 | ISS |
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Glyma15g03900 not represented in the dataset |
Glyma15g03900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g41490 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g034300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g03900.1 sequence type=CDS gene model=Glyma15g03900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGCAACTCCTTCCAAATTCCTTCAAACTCCCTCCAAACCCAAACTCCGATCCCAATCCAATCCCAAATCCTCGCCGGTTGTAACCCCCGACACTCCACAAACCCTATATCCTCGCAGATCCACGCGCGCCAAGTCCCTCCTCTTCGATGCTCCCAAGCCTCCCCACACACCGCTCGAAATCTCGCTCACAACTCCGAAGCGGAGGATACGACGATCCATCGATTGTGTCGATCAGGATTCCGGCGAAGATAAAGCCACAACCAGCAAAATTTCAGATAAAAATAAAGCTCCGGTCGTCGATGCGTCAAAGAAGAAGAAGAATGGGAAGAACTCAATTGAAGTTTCCTTTGCTCCGGTAACACCGGCTTCATCGGAAAAGGCATCCACGAGGAAGAGGGAGGGTGAGGGGGGTGTTGTTACCAGAGCTAAAAGAAGGAAATCGGAGAATCGTGAAAAGAGTGCAAAACTGCCTCAGAGGCGCGTGTATTACACAAAGGTGGTTTATGATGGAGGTGAGTTTGAATTGGGGGATGATGTTTATGTGAAGAGGAGAGAAGATGCTAGCTCCGATGACGAAGATCCCGAAATGGAGGAGTGTAGGATGTGTTTTTCCTCAAACGATGAGGTCATGATTGAGTGTGACGATTGTTTGGGTGGGTTTCATTTGAAATGCTTGAGGCCTCCATTGAAGGATGTTCCTGAAGGGGATTGGATCTGTGGGTTCTGCGAGGCTCGTAAGATGGGTATGGAAGTTCAGTTACCAAAGCCTCCAAAGGGTAAGAAACTAGTTAGGACTATGAGGGAGAAGCTCCTTTCCAGTGATTTGTGGTCTGGTCGTATTAAAAGCATATGGAGAGAGGTGGATGACAACTATTGGTGTCGGGTGCGCTGGTATACAATCCCAGAAGAGACTTCTGTTGGGCGGCAACCTCATAACCTGAGGAGGGAGCTATATCGAACTAATGATTTTGCTGACATTGAGATGGAATCTGTCCTTAGACATTGCCATGTCATGACCCCCAAAGAATATGCTAAAGCTAGCGATGAGGGAGATGATGTTTTCTTATGTGAATATGAGTATGACATCCATTGGCACAGTTTCAAACGTCTTGCTGATATTGACAATGAAACAGAGAATGGTGAAGAGCATGACAGTGACGAAGACTGGAATGTTGACAAGGAATCAGACTCTGACACAGATGAAGATGTTGAATACGAAAAAGAAAATATTAAAAATACACAATCTAAGCCATCAACAAGCCATCACTTAGCTGCAAATCTGCAGAAGGGACAGTTCTTTGGACTTCAAAAGATAGGCACAAAAACAATTCCACAGCATGTAAGATCGCACAAACAGACTGATCTTGAGAGAGCAAAGGCTACACTGTTGTTAGCGTCACTGCCAAAATCTTTACCTTGTAGAAATAAAGAAATGGAGGAGATAACTGCATTCATCAATGGTGCTCTTTCTGACAATCAATGTCTGGGACGTTGCCTCTACATTCATGGTGTTCCGGGAACTGGCAAGACAATGAGTGTACTATCAGTAATGAGAAGCTTGAAGTCAGAAGTTGATGCAGGAAACATCAAACCGTACACTTTTGTGGAGATTAATGGTCTGAAATTGGCATCACCCGAGAATATTTACAAGGTTATTTATGAGGCACTAAATGGCCACAGGGTCAGCTGGAAAAAGGCTCTCCACTTGCTAAATGAGAGATTTGTAGAAGGAAAGAAAACCAGAGATGAGGCTGACCGGCCATGTATTTTGCTTATTGATGAACTTGATCTTCTAGTAACCAGAAACCAGTCGGTTCTGTACAATATTCTTGACTGGCCTACTAAGCCACATTCCAAGCTAATTGTCATAGGGATAGCAAATACTATGGATCTTCCAGAGAAGTTACTTCCTCGTATATCAAGCCGAATGGGCATACAGAGGCTTTGCTTTGGCCCATATAATTATCAGCAGCTTCAAGAAATCATTTCAAGTCGCCTCAAGGGAATTGATGTATTTGAAAAGCAAGCTGTAGAATTTGCTTCAAGAAAGGTTGCAGCAATCTCTGGAGATGCACGTCGTGCTTTGGAGATATGCAGACGTGCAGCTGAAATAGCAGATTATCGTATGAAGAAGCTAATTTCTAATCCTGATTGTGTTACTGCAGGAAAGGGACTTGTTGGAATGGTAGATGTTGAAGCAGCCATTCAAGAAATGTTCCAAGCACCTCATATTCAAATGATGAAAAGCTGTTCCAGAGTTAGCAAAATTTTATTGACAGCAATGGTGCACGAGCTTTATAATACAGGAATGGGGGAAACCACTTTTGAAAAGTTGGCTATGAGGGTTTCATGCTTCTGTACCAGCAACGGAGAAGTGTTTCCTGGGTATGATACGCTCCTGCAAGTTGGCTGTAGGCTTGGTGAATGCAGGATTATTTTATGTGAAGCAGGTGCCAAGCACAGGTGGCAAAAATTGCAGCTTAATTTCCCGAGTGATGATGTTGCCTTTGCGCTGAGAGACTGCAAAGATCTGCCTTGGCTGTCAAAGTATCTAATGTAG
>Glyma15g03900.1 sequence type=predicted peptide gene model=Glyma15g03900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAATPSKFLQTPSKPKLRSQSNPKSSPVVTPDTPQTLYPRRSTRAKSLLFDAPKPPHTPLEISLTTPKRRIRRSIDCVDQDSGEDKATTSKISDKNKAPVVDASKKKKNGKNSIEVSFAPVTPASSEKASTRKREGEGGVVTRAKRRKSENREKSAKLPQRRVYYTKVVYDGGEFELGDDVYVKRREDASSDDEDPEMEECRMCFSSNDEVMIECDDCLGGFHLKCLRPPLKDVPEGDWICGFCEARKMGMEVQLPKPPKGKKLVRTMREKLLSSDLWSGRIKSIWREVDDNYWCRVRWYTIPEETSVGRQPHNLRRELYRTNDFADIEMESVLRHCHVMTPKEYAKASDEGDDVFLCEYEYDIHWHSFKRLADIDNETENGEEHDSDEDWNVDKESDSDTDEDVEYEKENIKNTQSKPSTSHHLAANLQKGQFFGLQKIGTKTIPQHVRSHKQTDLERAKATLLLASLPKSLPCRNKEMEEITAFINGALSDNQCLGRCLYIHGVPGTGKTMSVLSVMRSLKSEVDAGNIKPYTFVEINGLKLASPENIYKVIYEALNGHRVSWKKALHLLNERFVEGKKTRDEADRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFGPYNYQQLQEIISSRLKGIDVFEKQAVEFASRKVAAISGDARRALEICRRAAEIADYRMKKLISNPDCVTAGKGLVGMVDVEAAIQEMFQAPHIQMMKSCSRVSKILLTAMVHELYNTGMGETTFEKLAMRVSCFCTSNGEVFPGYDTLLQVGCRLGECRIILCEAGAKHRWQKLQLNFPSDDVAFALRDCKDLPWLSKYLM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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