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Report for Sequence Feature Glyma15g03885

Feature Type:gene_model
Chromosome:Gm15
Start:2722221
stop:2728077
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g03885
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G57650AT Annotation by Michelle Graham. TAIR10: lysophosphatidyl acyltransferase 2 | chr3:21349751-21352839 FORWARD LENGTH=389 SoyBaseE_val: 6.00E-157ISS
GO:0006655GO-bp Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process SoyBaseN/AISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005783GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum SoyBaseN/AISS
GO:0003841GO-mf Annotation by Michelle Graham. GO Molecular Function: 1-acylglycerol-3-phosphate O-acyltransferase activity SoyBaseN/AISS
GO:0016746GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups SoyBaseN/AISS
KOG1505 KOG Lysophosphatidic acid acyltransferase LPAAT and related acyltransferases JGI ISS
PTHR10983Panther 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE JGI ISS
PTHR10983:SF1Panther ACYL-COA:1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE JGI ISS
PF01553PFAM Acyltransferase JGI ISS
UniRef100_G7IUB7UniRef Annotation by Michelle Graham. Most informative UniRef hit: 1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Medicago truncatula RepID=G7IUB7_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1MDA9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MDA9_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma15g03885
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g03885 not represented in the dataset
Glyma15g03885 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g03885 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g034100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g03885
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g03885
>Glyma15g03885.1   sequence type=CDS   gene model=Glyma15g03885   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCAGTATTATTGACATCATACTCCGGTGGTTGAACTTGAACAACCGGCGCAGTGTAGGCCGGAACCGGATACACCGGTTTCGGCACAGGCGCGGCGGGTGCAGCATAAGCACTGGTGGTCTTCTTGGGCGTAGCGGCACTAATTCGCATGGGCCTGGTGGAGCAATAAACGCCGTTCATTTCAGTCATGGCCCGGTTCCGTTCATTCTCATCAGAAAACTTAACGAAACCGTAACCCTTGGAGCGGCCGGTGTTGGGGTCGCTGACGACTTTGGCGCCGCGAACGGAAGGGTAATGGGCGCGAAACATTTCCTGGAGAAGATAATCGGTTATGTCGGGGGCGAGATCGCCGACGAAGATGGAGTGTTCCAGGGCGGCATCGGGCCTGCGCTCGCCGATGCCGAAGGAGGCCCAATTGAGCCTGAAGGTCTGGTCGGTGGCGTTGTAGGTCTGGAGAACCCTTTCCGCTGTGGCGTGGGAGACGAACTCGACGAAGCCGTAGCCCTCGGGCTGGCCCGTGAGCTCGTTGCGGATGATTTTGATGGAGACCACCTCGCCGGCGGGGGCGAAGCAGTGGCTCAGGCTGTCTTCTTTGTCCTTCTTCGGCCACTATCAAAGAACTGCTATAGCAGAATAAACAAATTGCTCACAGAATCACTATGGTTGGAGCTTATATGGCTCATTGATTGGTGGGCTGGCATCAAGATTGAGCTATACACAGATTCAGAAACTCTTCAATTAATGGGTAAAGAAAATGCACTTGTAATCTGCAACCACAGGAGTGACATTGATTGGCTTATTGGATGGGTCTTAGCTCAGCGCTCGGGTTGCCTTGGTAGCACAGTAGCCATTATGAAGAAAGAAGTCAAATTTCTTCCCGTGCTAGGTTGGTCAATGTGGTTTGCTGAATATATATTTCTAGAAAGAGACTGGGCAAAAGATGAAACATCACTGAAGTCAGGTTTTAGGCATCTAGAGCACATGCCATTCCCTTTCTGGTTGGCCCTTTTTGTTGAAGGAACTCGTTTCACGCAGACAAAGCTTTTACAAGCTCAAGAGTTTGCTGCTTCAAAAGGGCTGCCTATACCTAGAAATGTTTTGATTCCTCGTACTAAGGGTTTTGTCACAGCAGTACAAAGCCTTCGGCCATTCGTTCCAGCCATTTATGATTGCACATATGCAGTTCCAAAGAGTGAGGCTTCACCTACTTTGGTGAGAATATTTAAAGGCATTTCTTGCCCGGTGAAGGTTCAAATTAAGCGTCACAAAATGGAGGAACTTCCAGAAACAGACGATGGCATTGGACAATGGTGCAAAGACGCGTTTGTTGCCAAGGATGCTTTGCTCGAGAAATATAGTACTACGGAGATATTCAGTGAACAAGATCTTCAACAAATCCGTCGGCATAAAACATCTATTTTGGTTGTGGTTTGTTGGTTGTGTCTGCTTGGATTCCTTGTTTATGAATTCTTCCAGTGGACCTCACTCCTCTCCTCCTGGGAAGGCATCTTATTTACGGTGCTTTTCCTGCTCCTGGTCACAGTTATTATGGAAATCTTCATTCATTCGTCTCAATCAGAGCGTTCTAAACCCCCCATGGTTTTACCAACACAAGACCCCATGAAGCAGAAGCTTCTTCAGACATGA
Predicted protein sequences of Glyma15g03885
>Glyma15g03885.1   sequence type=predicted peptide   gene model=Glyma15g03885   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GSIIDIILRWLNLNNRRSVGRNRIHRFRHRRGGCSISTGGLLGRSGTNSHGPGGAINAVHFSHGPVPFILIRKLNETVTLGAAGVGVADDFGAANGRVMGAKHFLEKIIGYVGGEIADEDGVFQGGIGPALADAEGGPIEPEGLVGGVVGLENPFRCGVGDELDEAVALGLARELVADDFDGDHLAGGGEAVAQAVFFVLLRPLSKNCYSRINKLLTESLWLELIWLIDWWAGIKIELYTDSETLQLMGKENALVICNHRSDIDWLIGWVLAQRSGCLGSTVAIMKKEVKFLPVLGWSMWFAEYIFLERDWAKDETSLKSGFRHLEHMPFPFWLALFVEGTRFTQTKLLQAQEFAASKGLPIPRNVLIPRTKGFVTAVQSLRPFVPAIYDCTYAVPKSEASPTLVRIFKGISCPVKVQIKRHKMEELPETDDGIGQWCKDAFVAKDALLEKYSTTEIFSEQDLQQIRRHKTSILVVVCWLCLLGFLVYEFFQWTSLLSSWEGILFTVLFLLLVTVIMEIFIHSSQSERSKPPMVLPTQDPMKQKLLQT*






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