SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G34890 | AT | Annotation by Michelle Graham. TAIR10: xanthine dehydrogenase 1 | chr4:16618736-16624983 REVERSE LENGTH=1361 | SoyBase | E_val: 0 | ISS |
| GO:0000302 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to reactive oxygen species | SoyBase | N/A | ISS |
| GO:0006145 | GO-bp | Annotation by Michelle Graham. GO Biological Process: purine nucleobase catabolic process | SoyBase | N/A | ISS |
| GO:0009414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to water deprivation | SoyBase | N/A | ISS |
| GO:0042554 | GO-bp | Annotation by Michelle Graham. GO Biological Process: superoxide anion generation | SoyBase | N/A | ISS |
| GO:0046110 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xanthine metabolic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004854 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: xanthine dehydrogenase activity | SoyBase | N/A | ISS |
| GO:0005506 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron ion binding | SoyBase | N/A | ISS |
| GO:0008762 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: UDP-N-acetylmuramate dehydrogenase activity | SoyBase | N/A | ISS |
| GO:0009055 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: electron carrier activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0016614 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on CH-OH group of donors | SoyBase | N/A | ISS |
| GO:0046872 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metal ion binding | SoyBase | N/A | ISS |
| GO:0050660 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding | SoyBase | N/A | ISS |
| GO:0051536 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron-sulfur cluster binding | SoyBase | N/A | ISS |
| GO:0051537 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 2 iron, 2 sulfur cluster binding | SoyBase | N/A | ISS |
| KOG0430 | KOG | Xanthine dehydrogenase | JGI | ISS | |
| PTHR11908 | Panther | XANTHINE DEHYDROGENASE | JGI | ISS | |
| PTHR11908:SF8 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF00111 | PFAM | 2Fe-2S iron-sulfur cluster binding domain | JGI | ISS | |
| PF00941 | PFAM | FAD binding domain in molybdopterin dehydrogenase | JGI | ISS | |
| PF01315 | PFAM | Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain | JGI | ISS | |
| PF01799 | PFAM | [2Fe-2S] binding domain | JGI | ISS | |
| PF02738 | PFAM | Molybdopterin-binding domain of aldehyde dehydrogenase | JGI | ISS | |
| PF03450 | PFAM | CO dehydrogenase flavoprotein C-terminal domain | JGI | ISS | |
| UniRef100_G7IUC2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Xanthine dehydrogenase/oxidase n=1 Tax=Medicago truncatula RepID=G7IUC2_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MDA8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MDA8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma15g03870 not represented in the dataset |
Glyma15g03870 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g41520 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g034000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g03870.2 sequence type=CDS gene model=Glyma15g03870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGGTGGCGAATGAGGCTATCTTATATGTTAACGGAGTTCGCAGGGTGTTACCTGATGGATTCGCTCATTTCACTCTTCTCGAGTATCTCAGAGATATAGGTCTGACCGGGACAAAACTAGGATGTGGGGAAGGTGGTTGTGGAGCTTGCACAGTTATGGTTTCTCAATTTGATAGAAGATTGAAGAAATGCTCACACTATGCTATCAATGCTTGCTTAGCACCTCTATATTCTGTAGAAGGGATGCACGTGATTACAGTGGAGGGATTGGGAAGCTGCAAGCGTGGACTACACCCTGTTCAGGAATCCCTGGCTCGGGCTCATGGTTCACAATGTGGATTTTGTACTCCTGGTTTTGTTATGTCCATGTATGCATTATTACGGTCAAGTCAAACACCGCCTAGTGAAGAACAAATTGAAGAATGCCTTGCAGGAAATTTATGTAGGTGCACTGGTTACAGACCAATATTTGATGCATTCCGGGTCTTCGCAAAAACTAGCAATGACTTGTATACTGGTGTTTCTTCATTGAGCCTTGAAGAAGGCAAGTCTGTTTGCCCATCAACAGGAAAACCCTGTTCATGTAATTTAAACAATGTAAATGATAAATGTGTAGGTGGTGATAAGAGATATGAGTCTACTTCCTATGATGAAATAGATGGTACCAAATACACAGAAAGGGAACTTATTTTTCCTCCTGAACTGTTGTTAAGGACACCAACCTCATTAAATTTGACTGGATTTGGTGGGCTAATGTGGTTTCGGCCTTTAACACTTCAACACGCATTGGATTTAAAAGACAAATATTCTGATGCAAAGTTGCTAGTTGGTAATACTGAGGTAGGAATTGAGATGAGGCTAAAGAGAATGCCATATCGGGTTCTAATTTCTGTAATGCATGTGCCAGAACTAAATGCTTTGGATTCAAAGGATGATGGCTTAGAGATAGGTGCTGCAGTAAGACTATCTGATCTTATGAATTTTTTCAAAAAGGTTGTAACTGAGCGAGCTGCTCATGAAACTTTGTCTTGTAAGGCTTTTATTGAGCAACTGAAATGGTTTGCTGGAACACAGATAAGAAATGCTGCATCAGTTGGTGGGAATATATGTACTGCCAGTCCAATATCAGATTTGAATCCTCTATGGATGGCAGCTAGAGCAAAATTTCGAATTATTGATGCTAAAGGAAACATCAGGACAGTCCTGGCCGAAAATTTTTTCCTCCCGGGTTATCGTAAAGTGAATTTAGCAAGTGGTGAAATCTTGCTGTCAGTATTCCTGCCCTGGAATAGGACTTTTGAGTTTGTGAAAGAATTTAAACAGTCTCATAGAAGGGATGATGATATTGCAATTGTAAATGCAGGTATTCGTGTTCATCTTCAGGAACATAGTGAAAACTGGGTGGTTGCTGATGCATCAATTTTTTATGGTGGGGTGGCTCCATATTCACTTGCAGCAACAAAAACTAAGGAATTTCTCATAGGAAAGAATTGGGACCAAGATCTCTTGCAAAATGCATTGAAAGTCCTACAAAAGGATATATTACTCAAGGAAGATGCTCCTGGCGGAATGGTAGAGTTCCGGAAATCTTTGACTTTAAGTTTCTTTTTTAAATTTTTTCTGTGGGTGTCTCATCAAATGGGTAGCATCAAAGAGAGTATACCATCATCCCATCTATCTGCTGTGCACTCAGTCCACCGACCACCAATTACAGGATCTCAGGACTATGAAATAAGGAAACGTGGGACTTCTGTGGGTTCTCCAGAGGTTCATCTATCTGCAAGACTTCAGGTTACAGGAGAAGCAGAATATACTGATGACACACCAATGCCTCCCAATGGTTTGCATGCTGCCTTTGTTTTGAGTAAAAAACCTCATGCTCGAATAAATAGAATTGATGATTCAGGGGCCATATCTTTGCCTGGATTTGTGAGCTTATTTCTGGCCAAAGATGTACCAGGTGATAATAAAATTGGAGCAGTTGTTGCTGATGAGGATCTCTTTGCTGTAGATTATGTCACTTGTGTGGGGCAGGTTATAGGAGTAGTTGTAGCTGATACTCATGAAAATGCAAAGATTGCAGCAAGAAGAGTTCATGTTGAGTATGAAGAGCTCCCAGCCATCCTTTCAATACGGGATGCCGTCAATGCTAGAAGTTTTCACCCCAATACAGAAAAGTGTTTGAGCAAAGGTGATGTTGATCACTGTTTTCAATCAGGTCAGTGTGACCGAATAATTGAAGGGGAAGTTCAGATGGGAGGTCAGGAACACTTTTATCTGGAGCCACATAGCACTTTGATATGGACAGTGGATGGTGGAAATGAAGTTCATATGATATCATCTACTCAAGCTCCTCAGAAGCACCAGAAATATGTTTCTCATGTTCTTGGCCTTCCCATGTCAAAGGTAGTTTGCAAAACAAAACGAGTTGGTGGTGGATTTGGGGGGAAGGAGACAAGATCAGCCTTTATTGCTGCTGCTGCTTCAGTTCCATCTTATCTGTTAAATCGACCAGTGAAAATCACACTGGACCGAGATGTGGACATGATGATAACTGGGCAGCGGCATAGTTTTCTAGGGAAGTACAAGGTTGGATTTACAAATGAAGGGAGGGTGCTTGCGCTGGATCTTGAAATTTATAACAATGCTGGAAACTCACTGGATCTATCGCTTGCTATCCTTGAACGTGCTATGTTTCATTCAGACAATGTGTATGAAATACCAAATATGAGGGTAATGGGGAGAGCTTGCTTTACTAATTTCCCTAGCCACACTGCTTTCCGTGGATTTGGTGGTCCTCAAGGCTTGCTCATTGCTGAAAACTGGATTCAAAGGATTGCTGTGGAACTCAAGATGAGTCCAGAAAAGATAAGGGAAATTAATTTTCAAGGAGAAGGATCCGTTCTGCATTATGGCCAGATAGTTCAGTACAGCACACTAGCCCCACTGTGGAATGAACTTAAGTTATCCTGTGACTTTGCGAAGGCACGTGAAGAAGTTGACCAATTCAATAGTCACAACCGCTGGAGGAAGCGTGGCATTGCTATGATTCCTAATAAGTTTGGTATATCCTTTACAACAAAGCTTATGAACCAGGCAGGTGCTCTGGTTCAAGTCTATACGGATGGAACTGTTTTAGTTACCCATGGGGGTGTAGAAATGGGGCAAGGTTTGCATACCAAAGTTGCCCAAATTGCTGCTTCAGCTTTCAACATCCCTCTTAGTTCTGTCTTCATATCAGATACTAGTACCGACAAGGTTCCTAATGCTTCAGCAACAGCAGCTTCTGCAAGTTCTGATATGTATGGAGCAGCGGTTTTGGATGCATGTGAGCAAATAATGGCACGCATGGAACCTATTGCTTCACAGCATAACTTCAACTCATTTGCTGAGCTAGTTGGTGCATGCTATGCAGAACGAATAGACCTTTCTGCCCATGGATTTTATATTACTCCTGATATTGGTTTTGATTGGACGACGGGTAAAGGAAAACCTTTCAGATATTTCACTTATGGGGCTGCATTTGCTGAGGTTGAAATTGACACCCTGACTGGAGATTTTCACACCAGAGTGGCAAACGTATTTTTGGATCTAGGTTATTCTCTGAATCCAGCAATAGATGTTGGACAGAATATACAAGGAAGTTTATCAAGGATGGAGAAACACTACACAGAGGATACAAATTCCTCTAAACGGAAGTCAGAAAATTTGATAGAAAAGAAATTAAGTCAGTTTCCTTATATTTTGTATTGGTGA
>Glyma15g03870.2 sequence type=predicted peptide gene model=Glyma15g03870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKVANEAILYVNGVRRVLPDGFAHFTLLEYLRDIGLTGTKLGCGEGGCGACTVMVSQFDRRLKKCSHYAINACLAPLYSVEGMHVITVEGLGSCKRGLHPVQESLARAHGSQCGFCTPGFVMSMYALLRSSQTPPSEEQIEECLAGNLCRCTGYRPIFDAFRVFAKTSNDLYTGVSSLSLEEGKSVCPSTGKPCSCNLNNVNDKCVGGDKRYESTSYDEIDGTKYTERELIFPPELLLRTPTSLNLTGFGGLMWFRPLTLQHALDLKDKYSDAKLLVGNTEVGIEMRLKRMPYRVLISVMHVPELNALDSKDDGLEIGAAVRLSDLMNFFKKVVTERAAHETLSCKAFIEQLKWFAGTQIRNAASVGGNICTASPISDLNPLWMAARAKFRIIDAKGNIRTVLAENFFLPGYRKVNLASGEILLSVFLPWNRTFEFVKEFKQSHRRDDDIAIVNAGIRVHLQEHSENWVVADASIFYGGVAPYSLAATKTKEFLIGKNWDQDLLQNALKVLQKDILLKEDAPGGMVEFRKSLTLSFFFKFFLWVSHQMGSIKESIPSSHLSAVHSVHRPPITGSQDYEIRKRGTSVGSPEVHLSARLQVTGEAEYTDDTPMPPNGLHAAFVLSKKPHARINRIDDSGAISLPGFVSLFLAKDVPGDNKIGAVVADEDLFAVDYVTCVGQVIGVVVADTHENAKIAARRVHVEYEELPAILSIRDAVNARSFHPNTEKCLSKGDVDHCFQSGQCDRIIEGEVQMGGQEHFYLEPHSTLIWTVDGGNEVHMISSTQAPQKHQKYVSHVLGLPMSKVVCKTKRVGGGFGGKETRSAFIAAAASVPSYLLNRPVKITLDRDVDMMITGQRHSFLGKYKVGFTNEGRVLALDLEIYNNAGNSLDLSLAILERAMFHSDNVYEIPNMRVMGRACFTNFPSHTAFRGFGGPQGLLIAENWIQRIAVELKMSPEKIREINFQGEGSVLHYGQIVQYSTLAPLWNELKLSCDFAKAREEVDQFNSHNRWRKRGIAMIPNKFGISFTTKLMNQAGALVQVYTDGTVLVTHGGVEMGQGLHTKVAQIAASAFNIPLSSVFISDTSTDKVPNASATAASASSDMYGAAVLDACEQIMARMEPIASQHNFNSFAELVGACYAERIDLSAHGFYITPDIGFDWTTGKGKPFRYFTYGAAFAEVEIDTLTGDFHTRVANVFLDLGYSLNPAIDVGQNIQGSLSRMEKHYTEDTNSSKRKSENLIEKKLSQFPYILYW*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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