SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G20870 | AT | Annotation by Michelle Graham. TAIR10: ZIP metal ion transporter family | chr3:7309499-7312476 REVERSE LENGTH=276 | SoyBase | E_val: 3.00E-167 | ISS |
| GO:0030001 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metal ion transport | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0046873 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metal ion transmembrane transporter activity | SoyBase | N/A | ISS |
| KOG2474 | KOG | Zinc transporter and related ZIP domain-containing proteins | JGI | ISS | |
| PTHR11065 | Panther | GUFA PROTEIN - RELATED | JGI | ISS | |
| PTHR11065:SF5 | Panther | INTEGRAL MEMBRANE PROTEIN | JGI | ISS | |
| PF02535 | PFAM | ZIP Zinc transporter | JGI | ISS | |
| UniRef100_B9RIA1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Integral membrane protein, putative n=1 Tax=Ricinus communis RepID=B9RIA1_RICCO | SoyBase | E_val: 1.00E-176 | ISS |
| UniRef100_I1MDA4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MDA4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma15g03820 not represented in the dataset |
Glyma15g03820 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g41580 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g033500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g03820.4 sequence type=transcript gene model=Glyma15g03820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAATGAAAAAAAAGTAAAAGTAAACATTAATTTATTTAACATAAAAAATAAAAATAAAAATAGGTAGTTGGTTGTTCTTGGGTAAGGTAAGGGCGAGAGAGTCCAGTGAGTGAGTGTTAGCGGTTCTGGAAATTGATTGAGTCGAAAAGAATCCTAACATAAAATGGATTCTCAGGTTGCCGTAGCTCTTGCTCTTTCACTTGTTGGTGGTGTCAGCACTTCTATCGGTGCACTTTTTGTAATTGTTAATAAAACGCCCAGTTTGAAGATGCTTGGGCTATTACAGGGTTTTGCTGCTGGTTTGATGCTTAGCATATCGTTCTTTGATTTGGCCCACAATGCTTTGAACTCACTGGGCTTCTTGAAAGGAAACCTTTGGTTTTTTGCCGGGGTAATATTCTTTGCTGTTGTTGCCAGTTTTATCCCAGAGCCAACACTTACTCCCACTTCTGATGTGAAGGGCAGAAAGAAAAATGGGGATGAAGGAGACAAGGATATTATGAAAAAGCATCGTCGGCAAGTTTTATTCAGTGGAATTGTTACAGCTGTAGGCATAAGTTTGCACAATTTTCCAGAAGGAATGGCAGTGTTCCTTGGATCCTTAAAGGGCCTCCGTGTTGGCCTCAATTTAGCATTAGCCATTGCTCTGCACAATATCCCAGAGGGTGTTGCTGTTGCACTTCCTGTTTATTTTGCGACACAAAGTAAATGGCAGGCATTCAAATTAGCATCACTTTCTGGCTTTGCTGAACCCCTGGGAGTTATAATCGTAGCCTATCTATTCCCTAGCAGCTTAAGTCCTGAGATTCTGGAAGGTTTACTTGGATCAGTTGGTGGAGTTATGGCTTTTCTGACCCTTCATGAAATGCTGCCATTGGCTTTTGATTATGCGGGACAGAAGCAATCTGTTAAGGCTGTCTTTTTGGGGATGGCTTTCATGTCTGCAAGCCTGTATTTTCTAAGTATCAGCTTACCTGAGGACTTAAGCTTGTAGGTGGGAACAACCTCTTCTCTTTTCTAAATGCCATGAATTTCAGTCTCATTGTGATGTTTCCTGATTCTAGCATCCATCGCAGCAAAGTTCCTTCAGAAGGGGTCTCACATAGTGTCCAAGGACAATAATGCACCGCCATGTGTTTAGGAAAATAATCAATCAGACATCAATTTTGAGGGATGCATTCCACCTATGATTGTGGTTCCCCTATAGACTAATGTACAAAAAAAATAAGAGTATAACTCCTTTAAATTCTTTAACTGACCCACCTTGTATACTGTATCATCAACGATAATGGACTTTAAATTGCACAATTTGCTGATAATGTGTTGTGTTAATATATTTCAGCCTTGGGGGTATAAGAAACA
>Glyma15g03820.3 sequence type=CDS gene model=Glyma15g03820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATTCTCAGGTTGCCGTAGCTCTTGCTCTTTCACTTGTTGGTGGTGTCAGCACTTCTATCGGTGCACTTTTTGTAATTGTTAATAAAACGCCCAGTTTGAAGATGCTTGGGCTATTACAGGGTTTTGCTGCTGGTTTGATGCTTAGCATATCGTTCTTTGATTTGGCCCACAATGCTTTGAACTCACTGGGCTTCTTGAAAGGAAACCTTTGGTTTTTTGCCGGGGTAATATTCTTTGCTGTTGTTGCCAGTTTTATCCCAGAGCCAACACTTACTCCCACTTCTGATGTGAAGGGCAGAAAGAAAAATGGGGATGAAGGAGACAAGGATATTATGAAAAAGCATCGTCGGCAAGTTTTATTCAGTGGAATTGTTACAGCTGTAGGCATAAGTTTGCACAATTTTCCAGAAGGAATGGCAGTGTTCCTTGGATCCTTAAAGGGCCTCCGTGTTGGCCTCAATTTAGCATTAGCCATTGCTCTGCACAATATCCCAGAGGGTGTTGCTGTTGCACTTCCTGTTTATTTTGCGACACAAAGTAAATGGCAGGCATTCAAATTAGCATCACTTTCTGGCTTTGCTGAACCCCTGGGAGTTATAATCGTAGCCTATCTATTCCCTAGCAGCTTAAGTCCTGAGATTCTGGAAGGTTTACTTGGATCAGTTGGTGGAGTTATGGCTTTTCTGACCCTTCATGAAATGCTGCCATTGGCTTTTGATTATGCGGGACAGAAGCAATCTGTTAAGGCTGTCTTTTTGGGGATGGCTTTCATGTCTGCAAGCCTGTATTTTCTAAGTATCAGCTTACCTGAGGACTTAAGCTTGTAG >Glyma15g03820.4 sequence type=CDS gene model=Glyma15g03820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATTCTCAGGTTGCCGTAGCTCTTGCTCTTTCACTTGTTGGTGGTGTCAGCACTTCTATCGGTGCACTTTTTGTAATTGTTAATAAAACGCCCAGTTTGAAGATGCTTGGGCTATTACAGGGTTTTGCTGCTGGTTTGATGCTTAGCATATCGTTCTTTGATTTGGCCCACAATGCTTTGAACTCACTGGGCTTCTTGAAAGGAAACCTTTGGTTTTTTGCCGGGGTAATATTCTTTGCTGTTGTTGCCAGTTTTATCCCAGAGCCAACACTTACTCCCACTTCTGATGTGAAGGGCAGAAAGAAAAATGGGGATGAAGGAGACAAGGATATTATGAAAAAGCATCGTCGGCAAGTTTTATTCAGTGGAATTGTTACAGCTGTAGGCATAAGTTTGCACAATTTTCCAGAAGGAATGGCAGTGTTCCTTGGATCCTTAAAGGGCCTCCGTGTTGGCCTCAATTTAGCATTAGCCATTGCTCTGCACAATATCCCAGAGGGTGTTGCTGTTGCACTTCCTGTTTATTTTGCGACACAAAGTAAATGGCAGGCATTCAAATTAGCATCACTTTCTGGCTTTGCTGAACCCCTGGGAGTTATAATCGTAGCCTATCTATTCCCTAGCAGCTTAAGTCCTGAGATTCTGGAAGGTTTACTTGGATCAGTTGGTGGAGTTATGGCTTTTCTGACCCTTCATGAAATGCTGCCATTGGCTTTTGATTATGCGGGACAGAAGCAATCTGTTAAGGCTGTCTTTTTGGGGATGGCTTTCATGTCTGCAAGCCTGTATTTTCTAAGTATCAGCTTACCTGAGGACTTAAGCTTGTAG
>Glyma15g03820.3 sequence type=predicted peptide gene model=Glyma15g03820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDSQVAVALALSLVGGVSTSIGALFVIVNKTPSLKMLGLLQGFAAGLMLSISFFDLAHNALNSLGFLKGNLWFFAGVIFFAVVASFIPEPTLTPTSDVKGRKKNGDEGDKDIMKKHRRQVLFSGIVTAVGISLHNFPEGMAVFLGSLKGLRVGLNLALAIALHNIPEGVAVALPVYFATQSKWQAFKLASLSGFAEPLGVIIVAYLFPSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQSVKAVFLGMAFMSASLYFLSISLPEDLSL* >Glyma15g03820.4 sequence type=predicted peptide gene model=Glyma15g03820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDSQVAVALALSLVGGVSTSIGALFVIVNKTPSLKMLGLLQGFAAGLMLSISFFDLAHNALNSLGFLKGNLWFFAGVIFFAVVASFIPEPTLTPTSDVKGRKKNGDEGDKDIMKKHRRQVLFSGIVTAVGISLHNFPEGMAVFLGSLKGLRVGLNLALAIALHNIPEGVAVALPVYFATQSKWQAFKLASLSGFAEPLGVIIVAYLFPSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQSVKAVFLGMAFMSASLYFLSISLPEDLSL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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