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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma15g03800

Feature Type:gene_model
Chromosome:Gm15
Start:2659000
stop:2659811
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G59010AT Annotation by Michelle Graham. TAIR10: Protein kinase protein with tetratricopeptide repeat domain | chr5:23820578-23822499 REVERSE LENGTH=359 SoyBaseE_val: 1.00E-33ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
PTHR26393Panther FAMILY NOT NAMED JGI ISS
PTHR26393:SF484Panther JGI ISS
UniRef100_Q56I14UniRef Annotation by Michelle Graham. Most informative UniRef hit: TPR-containing protein kinase n=1 Tax=Glycine max RepID=Q56I14_SOYBN SoyBaseE_val: 6.00E-36ISS
UniRef100_UPI0001B6399FUniRef Annotation by Michelle Graham. Best UniRef hit: UPI0001B6399F related cluster n=1 Tax=unknown RepID=UPI0001B6399F SoyBaseE_val: 4.00E-38ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g03800 not represented in the dataset

Glyma15g03800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g41600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g033300 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma15g03800.1   sequence type=CDS   gene model=Glyma15g03800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATATTGGAGACACTAGTCGTTACATCACATTGCTTTCTTCATTTCCTTTCCTATCTATCTCACTGTTGTTTTACCTTTTCCATTGTATTTTCATCAACTGTGTATGCAAGGCGCTGCTTTTGTTACCTTATGAAGAACATGGTACAAGAAGCACTGGGAGACGCCATGCAAGCTCAATCAGTATCCCCCACATGGCCAACTTCATTCTATCTTCAAGCAGTGGCCCTCTTCAGCCTCGGGATGGACCATGATGCAGAGGAAAGTCTTAAAGATGGCACAACACTGGAAACCAGAAAATATAGAAATTGA

>Glyma15g03800.1   sequence type=predicted peptide   gene model=Glyma15g03800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MILETLVVTSHCFLHFLSYLSHCCFTFSIVFSSTVYARRCFCYLMKNMVQEALGDAMQAQSVSPTWPTSFYLQAVALFSLGMDHDAEESLKDGTTLETRKYRN*







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