SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G13070 | AT | Annotation by Michelle Graham. TAIR10: MSF1-like family protein | chr5:4148216-4149062 FORWARD LENGTH=183 | SoyBase | E_val: 1.00E-113 | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| KOG3336 | KOG | Predicted member of the intramitochondrial sorting protein family | JGI | ISS | |
| PTHR11158 | Panther | MSF1/PX19 RELATED | JGI | ISS | |
| PTHR11158:SF18 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF04707 | PFAM | PRELI-like family | JGI | ISS | |
| UniRef100_B9RI96 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein MSF1, putative n=2 Tax=Ricinus communis RepID=B9RI96_RICCO | SoyBase | E_val: 9.00E-113 | ISS |
| UniRef100_I1MD98 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MD98_SOYBN | SoyBase | E_val: 7.00E-136 | ISS |
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Glyma15g03780 not represented in the dataset |
Glyma15g03780 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g033100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g03780.2 sequence type=transcript gene model=Glyma15g03780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCTGAATGGCGTAATAGAAGTTTGGCCAAAACGCGAAATCTGTGACCGGAGGAGATACCAGTGGGCACTCCGAAGCAACTTCACACTCCTGTTAATCTTTCATCCTATCTTTGTATTGTTGAACCCTCGATTCTCTGCAACATTCTTCGGAACACGTCTACAAGCACCCTTGGGAACGTGTAACTTGTGCATCTTGGCGCAAGTTTGCTGACCAAGAGAACAAACGCATATTATCCCATATTCTTGATGTTGACACATTGAACCACAGCCTTGACCCTTCATCAGGGATGCTTTACACGACCCGTGCTATCACGATCCATTGTCCTGGGCCGTGGTTTGTCCGCAAGATTGTTGGTCAGGATATTTGCCACTGTGTGGAATCCACTGTGGTGGATGCACGGTCGCGCTCCATGCAACTAACCTCCCGGAATATCAGCCTCCAGAAGTTCATTGAAGTGGAAGAGAAGATCCGATATGATCCTCACCCGGATAACCCGACTGGGTGGACAATTTGCCAGCAGGAGACTCGCATCCGGATTAAGCCGCTGTCGGCTTTGGCATCCATGGCTGAAAAGGTGGAGCAGCGATGTGCTGAAAAGTTCCTTCAGAATAGTGTCAAGGGTAGAGAGGTTATGGAGAGGATTTGTAAATATCTTGAAGCAGAATCAAGCAGCCTTGCCTTGTGATTCTATCTTTCTCATCTCAGTTTTGGGTTTATTTAGTTTAAATTGTTACATTTGTAAGATAACTGAGAAAACATTGCCACATCAAGCAAGACATGGAAGATGATGAAGCTTGTGTCTCTACCCTTGATGGTAAGAACACTATTTGGATCTTCTCTAAATTTTGAACTGGCAAATAATTTTTTAAATTGTTGTAACACAACTTAAAGAATCCTGTTGAATCTCCTTTTATCTGAATCTTGATCAGAGTGAGTTTGGGACCTAACACTGTTGTTCATGTTTGTCTCCTTTCCTAATCTTCCAAGGCGCACTTAATCAGAAGCTTTAGTTTTTATATGGATATCTTGAGGTAGAAGTGATTATCCATAGATTTTCAGGCATGCTTAATTGATGAATGTGTTGATCTCTTTTTCTTATTCTTTTTATGACATGTAGTTAATTGTTCTATAGAAGTTTGTTTTTGACGCAATATTCGGCATTGACAAAGTGAAAATGAAGTTGTAGTTAATTATTCAATCAAATCTGCTGATGAAGGGTTAACTTTGCACGGTAGCATTTCTGATGAGTTCCAAATATGAAGTCCACGTGCACGAGTGGGGAGATTTTACGTGTATCATTTACATTGTTGGATTTGGTGTTTTCAATGGTGAAATAACATTTTGTTTGGTAG
>Glyma15g03780.1 sequence type=CDS gene model=Glyma15g03780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGAAAGCATATACACAGGAACACGTCTACAAGCACCCTTGGGAACGTGTAACTTGTGCATCTTGGCGCAAGTTTGCTGACCAAGAGAACAAACGCATATTATCCCATATTCTTGATGTTGACACATTGAACCACAGCCTTGACCCTTCATCAGGGATGCTTTACACGACCCGTGCTATCACGATCCATTGTCCTGGGCCGTGGTTTGTCCGCAAGATTGTTGGTCAGGATATTTGCCACTGTGTGGAATCCACTGTGGTGGATGCACGGTCGCGCTCCATGCAACTAACCTCCCGGAATATCAGCCTCCAGAAGTTCATTGAAGTGGAAGAGAAGATCCGATATGATCCTCACCCGGATAACCCGACTGGGTGGACAATTTGCCAGCAGGAGACTCGCATCCGGATTAAGCCGCTGTCGGCTTTGGCATCCATGGCTGAAAAGGTGGAGCAGCGATGTGCTGAAAAGTTCCTTCAGAATAGTGTCAAGGGTAGAGAGGTTATGGAGAGGATTTGTAAATATCTTGAAGCAGAATCAAGCAGCCTTGCCTTGTGA >Glyma15g03780.2 sequence type=CDS gene model=Glyma15g03780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTTTACACGACCCGTGCTATCACGATCCATTGTCCTGGGCCGTGGTTTGTCCGCAAGATTGTTGGTCAGGATATTTGCCACTGTGTGGAATCCACTGTGGTGGATGCACGGTCGCGCTCCATGCAACTAACCTCCCGGAATATCAGCCTCCAGAAGTTCATTGAAGTGGAAGAGAAGATCCGATATGATCCTCACCCGGATAACCCGACTGGGTGGACAATTTGCCAGCAGGAGACTCGCATCCGGATTAAGCCGCTGTCGGCTTTGGCATCCATGGCTGAAAAGGTGGAGCAGCGATGTGCTGAAAAGTTCCTTCAGAATAGTGTCAAGGGTAGAGAGGTTATGGAGAGGATTTGTAAATATCTTGAAGCAGAATCAAGCAGCCTTGCCTTGTGA
>Glyma15g03780.1 sequence type=predicted peptide gene model=Glyma15g03780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVKAYTQEHVYKHPWERVTCASWRKFADQENKRILSHILDVDTLNHSLDPSSGMLYTTRAITIHCPGPWFVRKIVGQDICHCVESTVVDARSRSMQLTSRNISLQKFIEVEEKIRYDPHPDNPTGWTICQQETRIRIKPLSALASMAEKVEQRCAEKFLQNSVKGREVMERICKYLEAESSSLAL* >Glyma15g03780.2 sequence type=predicted peptide gene model=Glyma15g03780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLYTTRAITIHCPGPWFVRKIVGQDICHCVESTVVDARSRSMQLTSRNISLQKFIEVEEKIRYDPHPDNPTGWTICQQETRIRIKPLSALASMAEKVEQRCAEKFLQNSVKGREVMERICKYLEAESSSLAL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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