Glyma15g03780 - SoyBase

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Report for Sequence Feature Glyma15g03780

Feature Type:	gene_model
Chromosome:	Gm15
Start:	2652359
stop:	2654067
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g03780

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G13070	AT	Annotation by Michelle Graham. TAIR10: MSF1-like family protein \| chr5:4148216-4149062 FORWARD LENGTH=183	SoyBase	E_val: 1.00E-113	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
KOG3336	KOG	Predicted member of the intramitochondrial sorting protein family	JGI		ISS
PTHR11158	Panther	MSF1/PX19 RELATED	JGI		ISS
PTHR11158:SF18	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF04707	PFAM	PRELI-like family	JGI		ISS
UniRef100_B9RI96	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein MSF1, putative n=2 Tax=Ricinus communis RepID=B9RI96_RICCO	SoyBase	E_val: 9.00E-113	ISS
UniRef100_I1MD98	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MD98_SOYBN	SoyBase	E_val: 7.00E-136	ISS

Expression Patterns of Glyma15g03780

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g03780 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g033100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g03780

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g03780

Limit To All Plant Sequences

>Glyma15g03780.2   sequence type=transcript   gene model=Glyma15g03780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTGAATGGCGTAATAGAAGTTTGGCCAAAACGCGAAATCTGTGACCGGAGGAGATACCAGTGGGCACTCCGAAGCAACTTCACACTCCTGTTAATCTTTCATCCTATCTTTGTATTGTTGAACCCTCGATTCTCTGCAACATTCTTCGGAACACGTCTACAAGCACCCTTGGGAACGTGTAACTTGTGCATCTTGGCGCAAGTTTGCTGACCAAGAGAACAAACGCATATTATCCCATATTCTTGATGTTGACACATTGAACCACAGCCTTGACCCTTCATCAGGGATGCTTTACACGACCCGTGCTATCACGATCCATTGTCCTGGGCCGTGGTTTGTCCGCAAGATTGTTGGTCAGGATATTTGCCACTGTGTGGAATCCACTGTGGTGGATGCACGGTCGCGCTCCATGCAACTAACCTCCCGGAATATCAGCCTCCAGAAGTTCATTGAAGTGGAAGAGAAGATCCGATATGATCCTCACCCGGATAACCCGACTGGGTGGACAATTTGCCAGCAGGAGACTCGCATCCGGATTAAGCCGCTGTCGGCTTTGGCATCCATGGCTGAAAAGGTGGAGCAGCGATGTGCTGAAAAGTTCCTTCAGAATAGTGTCAAGGGTAGAGAGGTTATGGAGAGGATTTGTAAATATCTTGAAGCAGAATCAAGCAGCCTTGCCTTGTGATTCTATCTTTCTCATCTCAGTTTTGGGTTTATTTAGTTTAAATTGTTACATTTGTAAGATAACTGAGAAAACATTGCCACATCAAGCAAGACATGGAAGATGATGAAGCTTGTGTCTCTACCCTTGATGGTAAGAACACTATTTGGATCTTCTCTAAATTTTGAACTGGCAAATAATTTTTTAAATTGTTGTAACACAACTTAAAGAATCCTGTTGAATCTCCTTTTATCTGAATCTTGATCAGAGTGAGTTTGGGACCTAACACTGTTGTTCATGTTTGTCTCCTTTCCTAATCTTCCAAGGCGCACTTAATCAGAAGCTTTAGTTTTTATATGGATATCTTGAGGTAGAAGTGATTATCCATAGATTTTCAGGCATGCTTAATTGATGAATGTGTTGATCTCTTTTTCTTATTCTTTTTATGACATGTAGTTAATTGTTCTATAGAAGTTTGTTTTTGACGCAATATTCGGCATTGACAAAGTGAAAATGAAGTTGTAGTTAATTATTCAATCAAATCTGCTGATGAAGGGTTAACTTTGCACGGTAGCATTTCTGATGAGTTCCAAATATGAAGTCCACGTGCACGAGTGGGGAGATTTTACGTGTATCATTTACATTGTTGGATTTGGTGTTTTCAATGGTGAAATAACATTTTGTTTGGTAG

Coding sequences of Glyma15g03780

Limit To All Plant Sequences

>Glyma15g03780.1   sequence type=CDS   gene model=Glyma15g03780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAAAGCATATACACAGGAACACGTCTACAAGCACCCTTGGGAACGTGTAACTTGTGCATCTTGGCGCAAGTTTGCTGACCAAGAGAACAAACGCATATTATCCCATATTCTTGATGTTGACACATTGAACCACAGCCTTGACCCTTCATCAGGGATGCTTTACACGACCCGTGCTATCACGATCCATTGTCCTGGGCCGTGGTTTGTCCGCAAGATTGTTGGTCAGGATATTTGCCACTGTGTGGAATCCACTGTGGTGGATGCACGGTCGCGCTCCATGCAACTAACCTCCCGGAATATCAGCCTCCAGAAGTTCATTGAAGTGGAAGAGAAGATCCGATATGATCCTCACCCGGATAACCCGACTGGGTGGACAATTTGCCAGCAGGAGACTCGCATCCGGATTAAGCCGCTGTCGGCTTTGGCATCCATGGCTGAAAAGGTGGAGCAGCGATGTGCTGAAAAGTTCCTTCAGAATAGTGTCAAGGGTAGAGAGGTTATGGAGAGGATTTGTAAATATCTTGAAGCAGAATCAAGCAGCCTTGCCTTGTGA

>Glyma15g03780.2   sequence type=CDS   gene model=Glyma15g03780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTTACACGACCCGTGCTATCACGATCCATTGTCCTGGGCCGTGGTTTGTCCGCAAGATTGTTGGTCAGGATATTTGCCACTGTGTGGAATCCACTGTGGTGGATGCACGGTCGCGCTCCATGCAACTAACCTCCCGGAATATCAGCCTCCAGAAGTTCATTGAAGTGGAAGAGAAGATCCGATATGATCCTCACCCGGATAACCCGACTGGGTGGACAATTTGCCAGCAGGAGACTCGCATCCGGATTAAGCCGCTGTCGGCTTTGGCATCCATGGCTGAAAAGGTGGAGCAGCGATGTGCTGAAAAGTTCCTTCAGAATAGTGTCAAGGGTAGAGAGGTTATGGAGAGGATTTGTAAATATCTTGAAGCAGAATCAAGCAGCCTTGCCTTGTGA

Predicted protein sequences of Glyma15g03780

Limit To All Plant Sequences

>Glyma15g03780.1   sequence type=predicted peptide   gene model=Glyma15g03780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVKAYTQEHVYKHPWERVTCASWRKFADQENKRILSHILDVDTLNHSLDPSSGMLYTTRAITIHCPGPWFVRKIVGQDICHCVESTVVDARSRSMQLTSRNISLQKFIEVEEKIRYDPHPDNPTGWTICQQETRIRIKPLSALASMAEKVEQRCAEKFLQNSVKGREVMERICKYLEAESSSLAL*

>Glyma15g03780.2   sequence type=predicted peptide   gene model=Glyma15g03780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLYTTRAITIHCPGPWFVRKIVGQDICHCVESTVVDARSRSMQLTSRNISLQKFIEVEEKIRYDPHPDNPTGWTICQQETRIRIKPLSALASMAEKVEQRCAEKFLQNSVKGREVMERICKYLEAESSSLAL*

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