Glyma15g03740 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma15g03740

Feature Type:	gene_model
Chromosome:	Gm15
Start:	2617132
stop:	2620699
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g03740

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G51140	AT	Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein \| chr1:18943802-18945613 REVERSE LENGTH=379	SoyBase	E_val: 7.00E-73	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0048573	GO-bp	Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR10985	Panther	BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED	JGI		ISS
PTHR10985:SF42	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00010	PFAM	Helix-loop-helix DNA-binding domain	JGI		ISS
UniRef100_G7IUE7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor bHLH122 n=1 Tax=Medicago truncatula RepID=G7IUE7_MEDTR	SoyBase	E_val: 3.00E-180	ISS
UniRef100_I1MD93	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MD93_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g03740

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g03740

Paralog	Evidence	Comments
Glyma13g41670	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g03740 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g032700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g03740

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g03740

Limit To All Plant Sequences

>Glyma15g03740.4   sequence type=CDS   gene model=Glyma15g03740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTCAGATCTCGAGCAGCAGCCGCAGGTGAATTCCTCGGGTTTAACTCGGTACCGATCGGCGCCGAGTTCGTATTTCTCTAACATCATTGACCGCGAGTTCTACGAGCACGTCTTCAACCGTCCCTCGAGTCCCGAAACGGAGCGAGTGTTCTCACGCTTCGTTAACAGCTTAAACAGTGAAGAAGAAGATTCGCTCCACCACAAGCTCTCAACTGATTCTTCTTCTTCTGCTGCGGTTAAGGAAGAGGTTAACCAACAAGACCAGGGTATCAACGAGGAACACGTGGCGGTGGCTGCGCTACAGCAGAGTAATAACAACATCAATAATTACAACAACAACAACAACAACAACTACTCTGCTTCTCATAATTTCTACCAAAGCTCCTCCTCCAAACCTCCCTTGCCGAACCAGAACCCGAACCTTCCCTCAGCTATGGAGCAAGGATCGTTTTCAATGGGACTCAGGCATAGTGGAAATAATTCTAACCTTACCAGGCATAGTAGCTCTCCCGCAGGACTATTTTCCCAAATTAACATTGAAAATGTGTATGCTGGTGTGAGAGGCATGGGGAGTTTGGGAGCTGTTAACAACAGTATCGAAGATGCGAAATTTTCTAGTTCGAGGAGGTTGAAGAATCAACCGAACTATTCTTCGTCGGGGAGAATGTCGTCCATTGCTGAAATTGGGGACAAAGGGTATAGAGAAAGTAGTCCAGACAGTGAAGCTTTTGCTGATGGTAACGATTTTATGGCCGGTTTCCAAGTTGGTCATTGGGATGATACTGCAATGATGTCTGACAACGTTGGTGGTCTCAAAAGATTTAGTGAAGAAGATTCAAAACCATTTTCTGGCTTAAATGCGGTTGAGACTCAGAATGAAACGGGACAGACTCATGCTCCTTTGGCCCATCAGTTGAGTTTGCCAAATACTTCAGCTGAAATGGCTGCCATTGAGAAGTTTCTGCAGTTTTCAGATTCTGTTCCGTGCAAAATCCGTGCCAAACGGGGCTGTGCCACTCACCCAAGAAGCATTGCAGAGAGGGTTAGAAGAACTAAAATTAGTGAGCGTATGAGGAAACTTCAGGATCTTGTCCCAAACATGGACAAGCAAACTAACACAGCTGATATGTTGGACTTGGCTGTGGATTACATCAAAGACCTTCAAAAGCAAGTTCAGACACTTTCAGATTGTCATGCAAAGTGTACGTGTTCACACGAGAAGCAACAATAA

Predicted protein sequences of Glyma15g03740

Limit To All Plant Sequences

>Glyma15g03740.4   sequence type=predicted peptide   gene model=Glyma15g03740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESDLEQQPQVNSSGLTRYRSAPSSYFSNIIDREFYEHVFNRPSSPETERVFSRFVNSLNSEEEDSLHHKLSTDSSSSAAVKEEVNQQDQGINEEHVAVAALQQSNNNINNYNNNNNNNYSASHNFYQSSSSKPPLPNQNPNLPSAMEQGSFSMGLRHSGNNSNLTRHSSSPAGLFSQINIENVYAGVRGMGSLGAVNNSIEDAKFSSSRRLKNQPNYSSSGRMSSIAEIGDKGYRESSPDSEAFADGNDFMAGFQVGHWDDTAMMSDNVGGLKRFSEEDSKPFSGLNAVETQNETGQTHAPLAHQLSLPNTSAEMAAIEKFLQFSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQKQVQTLSDCHAKCTCSHEKQQ*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain