Report for Sequence Feature Glyma15g03680
Feature Type: gene_model
Chromosome: Gm15
Start: 2581990
stop: 2584501
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g03680
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G12900 AT
Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:4072151-4074445 REVERSE LENGTH=562
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
UniRef100_G3LQW8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: AT5G12900-like protein (Fragment) n=1 Tax=Capsella grandiflora RepID=G3LQW8_9BRAS
SoyBase E_val: 3.00E-92 ISS
UniRef100_I1MD87 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MD87_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g03680
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma15g03680
Paralog Evidence Comments
Glyma13g41730 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g03680 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g032100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g03680
Transcripts of Glyma15g03680
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g03680.2 sequence type=transcript gene model=Glyma15g03680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TTCCCTATAAGAACAGAGACAAGGCTCATTTCATTGGGTTTGAGACGTGACCTGTTGTATCCCTCATTCCATTTTCTGGTTCTCCACAAGATCTCATTCTTACCATAGATATAATAATAGCCATCAAGCCAAATCCAACCGTTGGATTGCCACCACTTGAAAACCCATTTTGTTCTTTTCCGATTGCCAATAGAAGTTCCAAGCATATCAATATTATCTTCTCGGCATTTACATTACATGCTCCACTTTGTTCTTTCTTTTGTTATGCCTCATGGCTGCAACTGCAACCGCAAAAACCAACAATGACAACAACCCTGAAATAACAAGGGAGGAAATCCAAACTGCCATAGCCAAAGCAGTGGAATTAAGGGCCCTTCATACTGCATTAACACAAGGAAGTAGTCCAGGCACAAACAATGCTAGATTTCCGTCACCTTCCCCGGCTTCTCACTTCTCTGCCCAAGACTACCCTGTTTTCACACCAGTAAGAATATAGTTATGAAGATGAGGCACACCAGAACCCAACAAGGAGCAGAACAATATCAGAAAGCTGGGATGAGAATGGGGTAGAAGGAAGGAACAGCATGGCCCCCTCAGATTACAAGGAGAAATTAAATTCAAGAAAGGAACTACCTTTTGGATTTGGCAACCTTGACACTCACATGTGTCCTGCTGATGATAGCAAATCTGTGACTGGTTCTTGTGCAAATCACATTACTTTTCTCCAAACATCGCCGGCGGCAGTGGCGAATGACTACTTCAAATCCAGGAGGAGAAACAGTCTGGGGGATTTGAAGCCCTTATCTTCCTGCAATAGATGCAACCCTGCTGTCATAACTAGTGAATATGAGAGCACTAGGAACAACAAGAGCTCCAACATTGTTGTCCCCCTCACAGACTCTCATGTCTCTTTTCAAACCCAACCAAAAAGTAAAGGGGTGATTTCATGGCTGTTCCCTAGGTTCAAGAAGAAGCATAAGAATGTGAGTTCCCCAAGCAGAACAGAATCTGAGGAAGTCTCCCAGGTTCTCAAGGACATGGGGATAGTGTCAGTTGAGGCACTGAAGAGGGAACTGATGGAGGCAAATGAGAGTAGAGATACTGCCTTGATGGAAGTTTCTGAGATGAGATCTTCACTTGGAGAACTGAAACAAAAGTTGGAGTACTTGGAGAGTTACTGTGAAGAGTTGAAGAAAGCTTTGAGGCAAGCAATGCTCACCAAAGAAACCACATTTTCAGAAAAGCTCAATAGCCCTCCCCAGAGAGGAACACCCTTTGATGGGAATGGGGAAAATTTGATGCCTGTGAGTGAGGATGTTATGGTAGAGGGCTTCTTGCAGATAGTGTCAGAATCAAGGTTATCAGTGAAGCAATTCTGCAAGACCCTTATATGCCAGATAGAGGAAACTGATCATCCTTTGATGGACAACTTGAACTTGCTCCTCCAACCATATAGGCTCTCCTTGAATTCCAAATACTCAAAGGCTGTTCTATACCATTTTGAAGCCTTCATAAACCAGTCCTTCTACCAAGACTTTGAGAATAGTGTGTTCCAAAAGAATGGCTGCACAAAATTCTTGGACCCTCGGCAGGATCGCCAAGCGCAATTCTCATCGTTTGTTGCACTTAGGAATTTGAGCTGGAACGAGGTTCTCAGAAAGGGTACTAAGTATTACAGTGAAGAGTTTAGCAAGTTCTGCGACCAGAAAATGAGTTGCATCATCACTACACTGAATTGGACTAGGCCTTGGCCTGAGCAACTCCTTCAGGCTTTCTTTGTGGCAGCAAAGTGCATATGGTTGCTTCATTTGCTGGCCTTTTCTTTCAACCCTCCATTGGGAATTTTAAGAGTGGAAGAGAATAGAAACTTTGATCCTCACTACATGGAAGATTTGGTTACTGATAGACAGAGGTCACAAGGTCCAAGCCGAGTCAAGATTATGGTGGTGCCAGGGTTCTATGTTCAGGATAGGATCTTGAGGTGTAGAGTTATTTGCAGGCACAAATCCGCACCATAAAGTAAAATGGAACTTGGAAATTGGTTTAATTTCACTGTCCATTTTATTTAGATTCTCTCTTCTTTTTAAGTTTGTAACTATCCAAATGTATGCGGTAATAATGTATAATCGCTCAAATTGGTTACATCTTTTACTAACTAGAGCTTGGATGCTTGATAATGAGCAGGTTGTGTTTGTGTATTACCGATAAAACTATGAATAAGAGTGGCTAATAATTAAATTGCA
Coding sequences of Glyma15g03680
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g03680.1 sequence type=CDS gene model=Glyma15g03680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTGCAACTGCAACCGCAAAAACCAACAATGACAACAACCCTGAAATAACAAGGGAGGAAATCCAAACTGCCATAGCCAAAGCAGTGGAATTAAGGGCCCTTCATACTGCATTAACACAAGGAAGTAGTCCAGGCACAAACAATGCTAGATTTCCGTCACCTTCCCCGGCTTCTCACTTCTCTGCCCAAGACTACCCTGTTTTCACACCAAGTTATGAAGATGAGGCACACCAGAACCCAACAAGGAGCAGAACAATATCAGAAAGCTGGGATGAGAATGGGGTAGAAGGAAGGAACAGCATGGCCCCCTCAGATTACAAGGAGAAATTAAATTCAAGAAAGGAACTACCTTTTGGATTTGGCAACCTTGACACTCACATGTGTCCTGCTGATGATAGCAAATCTGTGACTGGTTCTTGTGCAAATCACATTACTTTTCTCCAAACATCGCCGGCGGCAGTGGCGAATGACTACTTCAAATCCAGGAGGAGAAACAGTCTGGGGGATTTGAAGCCCTTATCTTCCTGCAATAGATGCAACCCTGCTGTCATAACTAGTGAATATGAGAGCACTAGGAACAACAAGAGCTCCAACATTGTTGTCCCCCTCACAGACTCTCATGTCTCTTTTCAAACCCAACCAAAAAGTAAAGGGGTGATTTCATGGCTGTTCCCTAGGTTCAAGAAGAAGCATAAGAATGTGAGTTCCCCAAGCAGAACAGAATCTGAGGAAGTCTCCCAGGTTCTCAAGGACATGGGGATAGTGTCAGTTGAGGCACTGAAGAGGGAACTGATGGAGGCAAATGAGAGTAGAGATACTGCCTTGATGGAAGTTTCTGAGATGAGATCTTCACTTGGAGAACTGAAACAAAAGTTGGAGTACTTGGAGAGTTACTGTGAAGAGTTGAAGAAAGCTTTGAGGCAAGCAATGCTCACCAAAGAAACCACATTTTCAGAAAAGCTCAATAGCCCTCCCCAGAGAGGAACACCCTTTGATGGGAATGGGGAAAATTTGATGCCTGTGAGTGAGGATGTTATGGTAGAGGGCTTCTTGCAGATAGTGTCAGAATCAAGGTTATCAGTGAAGCAATTCTGCAAGACCCTTATATGCCAGATAGAGGAAACTGATCATCCTTTGATGGACAACTTGAACTTGCTCCTCCAACCATATAGGCTCTCCTTGAATTCCAAATACTCAAAGGCTGTTCTATACCATTTTGAAGCCTTCATAAACCAGTCCTTCTACCAAGACTTTGAGAATAGTGTGTTCCAAAAGAATGGCTGCACAAAATTCTTGGACCCTCGGCAGGATCGCCAAGCGCAATTCTCATCGTTTGTTGCACTTAGGAATTTGAGCTGGAACGAGGTTCTCAGAAAGGGTACTAAGTATTACAGTGAAGAGTTTAGCAAGTTCTGCGACCAGAAAATGAGTTGCATCATCACTACACTGAATTGGACTAGGCCTTGGCCTGAGCAACTCCTTCAGGCTTTCTTTGTGGCAGCAAAGTGCATATGGTTGCTTCATTTGCTGGCCTTTTCTTTCAACCCTCCATTGGGAATTTTAAGAGTGGAAGAGAATAGAAACTTTGATCCTCACTACATGGAAGATTTGGTTACTGATAGACAGAGGTCACAAGGTCCAAGCCGAGTCAAGATTATGGTGGTGCCAGGGTTCTATGTTCAGGATAGGATCTTGAGGTGTAGAGTTATTTGCAGGCACAAATCCGCACCATAA
>Glyma15g03680.2 sequence type=CDS gene model=Glyma15g03680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCCCCCTCAGATTACAAGGAGAAATTAAATTCAAGAAAGGAACTACCTTTTGGATTTGGCAACCTTGACACTCACATGTGTCCTGCTGATGATAGCAAATCTGTGACTGGTTCTTGTGCAAATCACATTACTTTTCTCCAAACATCGCCGGCGGCAGTGGCGAATGACTACTTCAAATCCAGGAGGAGAAACAGTCTGGGGGATTTGAAGCCCTTATCTTCCTGCAATAGATGCAACCCTGCTGTCATAACTAGTGAATATGAGAGCACTAGGAACAACAAGAGCTCCAACATTGTTGTCCCCCTCACAGACTCTCATGTCTCTTTTCAAACCCAACCAAAAAGTAAAGGGGTGATTTCATGGCTGTTCCCTAGGTTCAAGAAGAAGCATAAGAATGTGAGTTCCCCAAGCAGAACAGAATCTGAGGAAGTCTCCCAGGTTCTCAAGGACATGGGGATAGTGTCAGTTGAGGCACTGAAGAGGGAACTGATGGAGGCAAATGAGAGTAGAGATACTGCCTTGATGGAAGTTTCTGAGATGAGATCTTCACTTGGAGAACTGAAACAAAAGTTGGAGTACTTGGAGAGTTACTGTGAAGAGTTGAAGAAAGCTTTGAGGCAAGCAATGCTCACCAAAGAAACCACATTTTCAGAAAAGCTCAATAGCCCTCCCCAGAGAGGAACACCCTTTGATGGGAATGGGGAAAATTTGATGCCTGTGAGTGAGGATGTTATGGTAGAGGGCTTCTTGCAGATAGTGTCAGAATCAAGGTTATCAGTGAAGCAATTCTGCAAGACCCTTATATGCCAGATAGAGGAAACTGATCATCCTTTGATGGACAACTTGAACTTGCTCCTCCAACCATATAGGCTCTCCTTGAATTCCAAATACTCAAAGGCTGTTCTATACCATTTTGAAGCCTTCATAAACCAGTCCTTCTACCAAGACTTTGAGAATAGTGTGTTCCAAAAGAATGGCTGCACAAAATTCTTGGACCCTCGGCAGGATCGCCAAGCGCAATTCTCATCGTTTGTTGCACTTAGGAATTTGAGCTGGAACGAGGTTCTCAGAAAGGGTACTAAGTATTACAGTGAAGAGTTTAGCAAGTTCTGCGACCAGAAAATGAGTTGCATCATCACTACACTGAATTGGACTAGGCCTTGGCCTGAGCAACTCCTTCAGGCTTTCTTTGTGGCAGCAAAGTGCATATGGTTGCTTCATTTGCTGGCCTTTTCTTTCAACCCTCCATTGGGAATTTTAAGAGTGGAAGAGAATAGAAACTTTGATCCTCACTACATGGAAGATTTGGTTACTGATAGACAGAGGTCACAAGGTCCAAGCCGAGTCAAGATTATGGTGGTGCCAGGGTTCTATGTTCAGGATAGGATCTTGAGGTGTAGAGTTATTTGCAGGCACAAATCCGCACCATAA
Predicted protein sequences of Glyma15g03680
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g03680.1 sequence type=predicted peptide gene model=Glyma15g03680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAATATAKTNNDNNPEITREEIQTAIAKAVELRALHTALTQGSSPGTNNARFPSPSPASHFSAQDYPVFTPSYEDEAHQNPTRSRTISESWDENGVEGRNSMAPSDYKEKLNSRKELPFGFGNLDTHMCPADDSKSVTGSCANHITFLQTSPAAVANDYFKSRRRNSLGDLKPLSSCNRCNPAVITSEYESTRNNKSSNIVVPLTDSHVSFQTQPKSKGVISWLFPRFKKKHKNVSSPSRTESEEVSQVLKDMGIVSVEALKRELMEANESRDTALMEVSEMRSSLGELKQKLEYLESYCEELKKALRQAMLTKETTFSEKLNSPPQRGTPFDGNGENLMPVSEDVMVEGFLQIVSESRLSVKQFCKTLICQIEETDHPLMDNLNLLLQPYRLSLNSKYSKAVLYHFEAFINQSFYQDFENSVFQKNGCTKFLDPRQDRQAQFSSFVALRNLSWNEVLRKGTKYYSEEFSKFCDQKMSCIITTLNWTRPWPEQLLQAFFVAAKCIWLLHLLAFSFNPPLGILRVEENRNFDPHYMEDLVTDRQRSQGPSRVKIMVVPGFYVQDRILRCRVICRHKSAP*
>Glyma15g03680.2 sequence type=predicted peptide gene model=Glyma15g03680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAPSDYKEKLNSRKELPFGFGNLDTHMCPADDSKSVTGSCANHITFLQTSPAAVANDYFKSRRRNSLGDLKPLSSCNRCNPAVITSEYESTRNNKSSNIVVPLTDSHVSFQTQPKSKGVISWLFPRFKKKHKNVSSPSRTESEEVSQVLKDMGIVSVEALKRELMEANESRDTALMEVSEMRSSLGELKQKLEYLESYCEELKKALRQAMLTKETTFSEKLNSPPQRGTPFDGNGENLMPVSEDVMVEGFLQIVSESRLSVKQFCKTLICQIEETDHPLMDNLNLLLQPYRLSLNSKYSKAVLYHFEAFINQSFYQDFENSVFQKNGCTKFLDPRQDRQAQFSSFVALRNLSWNEVLRKGTKYYSEEFSKFCDQKMSCIITTLNWTRPWPEQLLQAFFVAAKCIWLLHLLAFSFNPPLGILRVEENRNFDPHYMEDLVTDRQRSQGPSRVKIMVVPGFYVQDRILRCRVICRHKSAP*