Glyma15g03500 - SoyBase

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Report for Sequence Feature Glyma15g03500

Feature Type:	gene_model
Chromosome:	Gm15
Start:	2432350
stop:	2444284
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g03500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G05960	AT	Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein \| chr1:1808478-1815060 REVERSE LENGTH=982	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
KOG1877	KOG	Putative transmembrane protein cmp44E	JGI		ISS
PTHR12444	Panther	UNCHARACTERIZED	JGI		ISS
UniRef100_G7IHU2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: EFR3-like protein n=1 Tax=Medicago truncatula RepID=G7IHU2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233B025	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B025 related cluster n=1 Tax=unknown RepID=UPI000233B025	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g03500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g03500

Paralog	Evidence	Comments
Glyma13g41900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g03500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g030400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g03500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g03500

Limit To All Plant Sequences

>Glyma15g03500.1   sequence type=CDS   gene model=Glyma15g03500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGGTTATGTCCAGGCGGGTTGTCCCCGTCTGTGGTAACCTCTGTGTATTTTGTCCTTCTCTTCGTGCAAGATCAAGGCAACCAGTGAAACGGTACAAGAAGTTCATTGCTGATATATTCCCCCGTAATCAGGCTGCTGAGCCTAATGATAGGAAAATTGGAAAGCTATGTGAGTATGCTTCTAAGAATCCATTGAGAATTCCAAAGATTACTGACAACTTGGAGCAAAGATGTTACAAGGATTTGCGTAATGAAAACTATGGTTCAGTTAAAGTGGTCTTGTGTATATACAGGAAATTGTTATCGACATGTAAGGAGCAGATGCCACTGTTTGCCAATAGTTTATTAGGGATCATTCGGACTCTTCTAGAACAAACTCGAGCAGATGAAATGCAGATCTTAGGTTGCAACACTCTTGTAGAATTTATAGATAGCCAGACAGATGGTACATACATGTTCAACTTAGAGGGTTTTATACCAAAACTATGTCAATTGGCTCAAGAAGTGGGTGATAATGAACAAGCTCTACTTCTACGTTCAGCTGGACTGCAAGCTCTATCCCATATGGTGCAGTTCATGGTAGAGCACTCACATCTTTCAATGGATTTTGACAAAATTATATCAGTGATTTTGGAGAATTTCAAGGATCTCCAATCCAAATCCAATCTTGCCAAAGTAGAGAAACTGAATTCACAATCTCAGAGTCAGTTGGTCCAAGGATTTCCCGAAAAAGGAGCTGAGACAGAGCCTAAGTTGGACACTAAAGATCCTGCTTATTGGTCAAAGGTTTGCTTGTATAATATTGCCAAATTGGCAAAGGAAGCTACAACTGTGCGGCGTGTCCTCGAACTGCTTTTTCATAATTTTGATAGTGAAAACCACTGGTCTTCTGAAAAGGGAGTTGCTTCTTGTGTTTTGATGTATTTGCAGTCCCTTCTAGCAGAATCAGGAGATAACTCCCATCTTCTGTTGTCCAGTTTGGTCAAGCACTTGGATCATAAGAATGTTGCTAAGAAGCCTATCCTTCAGATTGATATTATTAACACCACCATGCAGCTTGCACAAAATGTGAAGCAGCAGGCTTCAGTTGCAATAATTGGTGCAATATCTGACCTCATTAAACATTTAAGGAAATGTCTGCAAAATTTATCTGAAGCATCCAGCAATGGAAATGATGCATATAGGTTGAATGCTGAACTTCAGTCTTCCTTAGAAATGTGTATATTACAACTTTCAAAGAAGGTTGGGGATATAGGACCAATTCTTGATTTGATGGCTGTGGCACTGGAGAATATCCCAATTACTACCATCATAGCAAGATCAACAATCACTGCTGTCTATCAAACAGCAAAATTAATCACTTCCATCCCCAATGTGTCATATCACAATAAGGCTTTCCCTGATGCCTTGTTTCATCAATTGCTCCTGGCCATGGCTCATCCTGACTGTGAAACACAAATTGGAGCACATAGTGTCTTCTCCATGGTGCTTATGCCATCCATGTTTTCTCCTTGGTTAGACCACAAAACAAAGATTGCTCAGAAGGCACAGAATGACAGCTTCTCCACTCAGCATGAAACTTTTTCTGGAGCTGAAAACTTGAATGGGAAACTGGAAGAAGGAAAGGCAATAGCCAGTGTCAATGGGAAGAAATATGTGATTCATCCATATCATCGCTACAGCTTTAGTCCGAAGCTAACTGATGGAAAAGATGATCGAAGTTCACTCAGGCTGAGCAGTCACCAAGTGAGTCTTTTGCTTTCTTCAATCTGGGTTCAGGCAACATCTGTGGAAAATGGCCCTGCAAATTATGAGGCAATGGCACACACCTATAGCATTGCTTTATTATTTTCTCGTTCCAAGGTGTCAAATTACATGGCTTTAGCAAGATGTTTTCAACTTGCATTCTCCCTCAGGAGCATCTCTTTGGACCAAGAAGGAGGTTTACAACCATCTCGCAGGAGGTCCCTTTTTACCTTGGCTTCATACATGCTTATCTTCTCTGCCAGGGCTGGCAATGTCCCTGATCTTATTCCAAAAGTTAAAGCATCACTGACAGAGGCAACAGTAGATCCTTTTCTTGAATTGGTTGATGATATCCGGCTGCAGGCTGTCTGTATAGAATCAGAGAAGATAATTTATGGATCTCAGGAAGATGAGTTCACTGCTGTGAAGTCTCTTTCAGCTGTAGAATTGGATGACAAGCTGTTGAAAGAGACTGTAATATCATACTTTATGACTAAATTTACAAAATTGTCTGAGGATGAATTGTCTAGTGTAAAGAATCAACTTCTACAGGGTTTTTCCCCTGATGATGCATATCCATCAGGACCTCCATTATTTATGGAGACACCAAGACTATGTCCTCCTCTTGCTCAGATTGAGTTCCCATACTATGATGAGATAATGGTTCCAGATGATTTGATAGAGGAAGAGACTGAACCTGAACATAGTGGAAGTCAGCCAGATCGCAAAACATCAATTTCAGCCAACTACCCCGATGTTCTAAATGTTAATCAACTCTTGGATTCGGTTTTGGAAACTGCACGGCAAGTTGCAAGTTTCTCCACTTCCTCAACTCCTTTACCTTATGACCAAATGAAGAATCAGTGCGAGGCACTTGTAACAGGGAAACAACAGAAGATGTCAGTCATTCAGAGTTTCAAGCATCAACAGGAGAGTAAGGCCATAATTCTTTCAAGTGAAAATGAAGTAAACGTTTCCTCTCTACCTGCTAAGGCACTGGAATATTCAAATGGTGATTTGAAGTTAGTGACTCAGCAGCAATTTCAAGCACAGGATCAAGCACGCCACCAATCTCATGAATCTGGGCAGCAACACTCTTTGAGACTACCACCTTCGAGCCCGTATGATAAATTCTTGAAAGCAGCGGGATGCTAA

Predicted protein sequences of Glyma15g03500

Limit To All Plant Sequences

>Glyma15g03500.1   sequence type=predicted peptide   gene model=Glyma15g03500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVMSRRVVPVCGNLCVFCPSLRARSRQPVKRYKKFIADIFPRNQAAEPNDRKIGKLCEYASKNPLRIPKITDNLEQRCYKDLRNENYGSVKVVLCIYRKLLSTCKEQMPLFANSLLGIIRTLLEQTRADEMQILGCNTLVEFIDSQTDGTYMFNLEGFIPKLCQLAQEVGDNEQALLLRSAGLQALSHMVQFMVEHSHLSMDFDKIISVILENFKDLQSKSNLAKVEKLNSQSQSQLVQGFPEKGAETEPKLDTKDPAYWSKVCLYNIAKLAKEATTVRRVLELLFHNFDSENHWSSEKGVASCVLMYLQSLLAESGDNSHLLLSSLVKHLDHKNVAKKPILQIDIINTTMQLAQNVKQQASVAIIGAISDLIKHLRKCLQNLSEASSNGNDAYRLNAELQSSLEMCILQLSKKVGDIGPILDLMAVALENIPITTIIARSTITAVYQTAKLITSIPNVSYHNKAFPDALFHQLLLAMAHPDCETQIGAHSVFSMVLMPSMFSPWLDHKTKIAQKAQNDSFSTQHETFSGAENLNGKLEEGKAIASVNGKKYVIHPYHRYSFSPKLTDGKDDRSSLRLSSHQVSLLLSSIWVQATSVENGPANYEAMAHTYSIALLFSRSKVSNYMALARCFQLAFSLRSISLDQEGGLQPSRRRSLFTLASYMLIFSARAGNVPDLIPKVKASLTEATVDPFLELVDDIRLQAVCIESEKIIYGSQEDEFTAVKSLSAVELDDKLLKETVISYFMTKFTKLSEDELSSVKNQLLQGFSPDDAYPSGPPLFMETPRLCPPLAQIEFPYYDEIMVPDDLIEEETEPEHSGSQPDRKTSISANYPDVLNVNQLLDSVLETARQVASFSTSSTPLPYDQMKNQCEALVTGKQQKMSVIQSFKHQQESKAIILSSENEVNVSSLPAKALEYSNGDLKLVTQQQFQAQDQARHQSHESGQQHSLRLPPSSPYDKFLKAAGC*

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