Glyma15g03460 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma15g03460

Feature Type:	gene_model
Chromosome:	Gm15
Start:	2419917
stop:	2421447
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g03460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G43290	AT	Annotation by Michelle Graham. TAIR10: Calcium-binding EF-hand family protein \| chr2:17991308-17991955 REVERSE LENGTH=215	SoyBase	E_val: 3.00E-89	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
KOG0027	KOG	Calmodulin and related proteins (EF-Hand superfamily)	JGI		ISS
PTHR10891	Panther	CALMODULIN	JGI		ISS
PTHR10891:SF141	Panther	CALCIUM-BINDING PROTEIN	JGI		ISS
PF00036	PFAM	EF hand	JGI		ISS
UniRef100_C6T4H1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6T4H1_SOYBN	SoyBase	E_val: 1.00E-107	ISS
UniRef100_G7IHU6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin-like protein n=1 Tax=Medicago truncatula RepID=G7IHU6_MEDTR	SoyBase	E_val: 7.00E-101	ISS

Expression Patterns of Glyma15g03460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g03460

Paralog	Evidence	Comments
Glyma13g41930	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g03460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g030100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g03460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g03460

Limit To All Plant Sequences

>Glyma15g03460.2   sequence type=transcript   gene model=Glyma15g03460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGCAGATCCAGTTGTGCCCCTTACCAAAAACGCGTTAGAGTTAAAGTGGCTGAAGAGACAGCTCTTGCATGTCTCTTAAAAGCTCTGAGTGAGGCTGGAGCAACAAACAAAGCATAAAACAACCTGAATTCAACTCACTTCAATTTCTTTACCTTATATATATCTATCCAATTAACCACTCTTATATTTAGAATCCAAAAATCTCTCGTCGTCCAAGAAAGAAGCACCACAAATTAATTCTCGTTTCCCATTCCCATCCCCATGCCAACTATTTTGCATAGGATTTTCCTTCTTTACAACCTCGTACACTCATTCCTCCTCTGTCTGGTCCCCAAGAAGTGCCCGCATCATCAAGAGAACAACAATGGACCCCAACGAGCTGAAGCGCGTGTTCCAGATGTTCGACCGCAACGGCGACGGAAGAATAACGAAGAAGGAGCTGAACGACTCGCTGGAGAATCTTGGCATCTTCATTCCTGACAAGGAGCTCGGCCAAATGATCGAGAGGATTGACGTCAACGGCGATGGCTGCGTCGACATCGACGAGTTCGGGGAGCTCTACCAGACCATCATGGACGAGCGCGACGAGGAGGAGGACATGAGGGAGGCCTTCAACGTCTTCGACCAGAACGCCGACGGCTTCATCACCGTCGACGAGTTGAGGACCGTCCTGTCCTCCCTCGGCTTGAAGCAGGGCAGAACCGTCCAAGACTGCAAGAACATGATATCCAAGGTTGATGTTGATGGAGACGGCATGGTCGATTTCAAGGAGTTCAAGCAAATGATGAAAGGGGGTGGCTTCAGTGCTCTCACTTAAATTCATTTCTTTCACATCCATTCAATCTATCTATTCCCATACATCTTTGCTTTGTTTTGTTCTTGTATATAAGTTTCAGGAGAAATAATTACATGATTCGATCAACAAGGTAATTGTGTTTTCTCTAACTAATCTCCACGTCACACACATGTAATGGTTTCCGACCATGGACGGTATATGATTTAGATCAATCCCATATGATCTCGTCGTCCTAGGTATGCAATGTAATGTGCGCATTAATTTGTGCCTCGTATTTACCATGCATGTCATTTTTATTTTTTTTGGAAGAAGCACGCGTCGACGCTTTTGTCAGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTCCAATGTTAGACGTTGGTTTTGGGGGGTTAGAACCTGGCTCGATAAGTGAGATGAGCCTTGCCCTGGTATTGCTACAACTTCATGTCTTGGTTTTTTGGGGGAGGAAGGCCGTTGAAATCGGGAGACTATTGCTAGTCACAAGATCTGTTTGTGTTTTCTTGTTGTTAAAGTTTTGAGGCCGTAAAGGTTGGTTCTGTTTTTACCATGTAAAACTCTGTTTGATGATTTTGTTGAATCTTGATCTCCCTTTCTTTCTTTCTTTTTAATTTATCGGATAAATAATCTAA

Coding sequences of Glyma15g03460

Limit To All Plant Sequences

>Glyma15g03460.1   sequence type=CDS   gene model=Glyma15g03460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAACTATTTTGCATAGGATTTTCCTTCTTTACAACCTCGTACACTCATTCCTCCTCTGTCTGGTCCCCAAGAAGGTGCGTCCCTTCCTCCCCCCTTCTTGGTTCCAAACCAAAACCATCACTGCACCTTCTTCTTCTTCTTCTTCTTCTTCCAGTGCCCGCATCATCAAGAGAACAACAATGGACCCCAACGAGCTGAAGCGCGTGTTCCAGATGTTCGACCGCAACGGCGACGGAAGAATAACGAAGAAGGAGCTGAACGACTCGCTGGAGAATCTTGGCATCTTCATTCCTGACAAGGAGCTCGGCCAAATGATCGAGAGGATTGACGTCAACGGCGATGGCTGCGTCGACATCGACGAGTTCGGGGAGCTCTACCAGACCATCATGGACGAGCGCGACGAGGAGGAGGACATGAGGGAGGCCTTCAACGTCTTCGACCAGAACGCCGACGGCTTCATCACCGTCGACGAGTTGAGGACCGTCCTGTCCTCCCTCGGCTTGAAGCAGGGCAGAACCGTCCAAGACTGCAAGAACATGATATCCAAGGTTGATGTTGATGGAGACGGCATGGTCGATTTCAAGGAGTTCAAGCAAATGATGAAAGGGGGTGGCTTCAGTGCTCTCACTTAA

>Glyma15g03460.2   sequence type=CDS   gene model=Glyma15g03460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCCCAACGAGCTGAAGCGCGTGTTCCAGATGTTCGACCGCAACGGCGACGGAAGAATAACGAAGAAGGAGCTGAACGACTCGCTGGAGAATCTTGGCATCTTCATTCCTGACAAGGAGCTCGGCCAAATGATCGAGAGGATTGACGTCAACGGCGATGGCTGCGTCGACATCGACGAGTTCGGGGAGCTCTACCAGACCATCATGGACGAGCGCGACGAGGAGGAGGACATGAGGGAGGCCTTCAACGTCTTCGACCAGAACGCCGACGGCTTCATCACCGTCGACGAGTTGAGGACCGTCCTGTCCTCCCTCGGCTTGAAGCAGGGCAGAACCGTCCAAGACTGCAAGAACATGATATCCAAGGTTGATGTTGATGGAGACGGCATGGTCGATTTCAAGGAGTTCAAGCAAATGATGAAAGGGGGTGGCTTCAGTGCTCTCACTTAA

Predicted protein sequences of Glyma15g03460

Limit To All Plant Sequences

>Glyma15g03460.1   sequence type=predicted peptide   gene model=Glyma15g03460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPTILHRIFLLYNLVHSFLLCLVPKKVRPFLPPSWFQTKTITAPSSSSSSSSSARIIKRTTMDPNELKRVFQMFDRNGDGRITKKELNDSLENLGIFIPDKELGQMIERIDVNGDGCVDIDEFGELYQTIMDERDEEEDMREAFNVFDQNADGFITVDELRTVLSSLGLKQGRTVQDCKNMISKVDVDGDGMVDFKEFKQMMKGGGFSALT*

>Glyma15g03460.2   sequence type=predicted peptide   gene model=Glyma15g03460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPNELKRVFQMFDRNGDGRITKKELNDSLENLGIFIPDKELGQMIERIDVNGDGCVDIDEFGELYQTIMDERDEEEDMREAFNVFDQNADGFITVDELRTVLSSLGLKQGRTVQDCKNMISKVDVDGDGMVDFKEFKQMMKGGGFSALT*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain