Glyma15g03440 - SoyBase

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Report for Sequence Feature Glyma15g03440

Feature Type:	gene_model
Chromosome:	Gm15
Start:	2398248
stop:	2401615
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g03440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G59470	AT	Annotation by Michelle Graham. TAIR10: Far-red impaired responsive (FAR1) family protein \| chr3:21979099-21980097 REVERSE LENGTH=251	SoyBase	E_val: 1.00E-105	ISS
GO:0009639	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to red or far red light	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PF03101	PFAM	FAR1 DNA-binding domain	JGI		ISS
UniRef100_I1MD62	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MD62_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q93Z68	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT3g59470/T16L24_20 n=1 Tax=Arabidopsis thaliana RepID=Q93Z68_ARATH	SoyBase	E_val: 5.00E-103	ISS

Expression Patterns of Glyma15g03440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g03440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g029900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g03440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g03440

Limit To All Plant Sequences

>Glyma15g03440.2   sequence type=transcript   gene model=Glyma15g03440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAGTTGACTTTGGTTGTAAGTGTCCAACGAGGCATTGACATGCAAGGTGAGGTACACAGGAGCGGTAATATGGTGTTCCACACCTGAATCTCAACTCCTCTGTTCTGATTCTGAATGAATCTGCTTCTGCTGTCTCTGCACGGAACACAAAAACATAAAAAGTTCATTTTCACAATCACGGTCGCTTCCTACGACTATCGAATTCGCGTCAGCCTCAATTCTCATGGAGTTTGGGATTGATGCCTCCATTAATGGTGAGACAGTAGGAAATGCTACTATAGTGCAGATTAATAGCAGCACAGCTGATGGAAACAAAGTGGGCTGCAGTTCTTTTAATCCTGCTTATAAACAAGGTCATGATGATAATATAACTCAAGATTCTTCTGGAGGGGACACAATCCCATCAGGAATTCCTGCAGTATCGGTTGCGTCAGTTGATGAGCCCTATGTGGGCCAGGAGTTTGAATCTGAAGCTGCAGCACATGCATTCTATAATGCATATGCTAAACGTGTTGGATTCATCATACGTGTAAGTAAGCTCTCACGATCAAGGCGTGATGGAACTGCTATTGGACGGGCTCTTGTTTGCAACAGAGAAGGTTACAGAATGCCCGACAAACGTGAAAAGATTGTAAGGCAAAGGGCGGAGACAAGGGTTGGTTGCAGGGCAATGATTTTGGTGAGGAAAGTAAGTTCTGGTAAATGGGTTATTACAAAGTTTATAATGGAACACACACATCCTTTGACACCTGGAAAAGGTAGAAGAGATTGCATTTATGAGCAATATCCGAATGAACATGATAAAATTCGAGAACTATCCCAGCAGTTGGCTATAGAGAGAAAGCGATCTGCAACCTATAAAAGGCATCTTGAATTGATATTTGAGCAAATTGAAGAGCACAATGATAGTCTTTCAAAGAAAATACAACACATAGTGGACAGTGTGAAGGAGATGGAAACCAAAGAACAGAATCAGAGATAGCTTGAGCTCAGTTATCTAGTCTTTTAATTCTTTTCCACTGGATGAAACATGCAATCAACTGTTCAGGTCAAAAGTGCTGCTAGAAATATCGTGCAATAATATAGTTGCTGACCTAGGTATCAGCTTTAGGTGTCAGCTGAGTTCTGTAGTTCAATTTGCCAAGCTCAATGGAACTCAATAATCCATTGGATTGCTTTATATGCAGTGATATTTATAGTTCAGTCAATGTACAGGTCCTTTGAATCCATTCTTCTGAAGTTACACTAACAATGTGTGACTCATAACAGGCATGCAAATGCCTTGACAGAATTAAATTGTTCCACTTCCGTTGTTAATGTTGTACAGTTTGATCCATGGCTGTGTTCTTTGTATAACATTTACATTAAATAATGTTGAGAATGCACAGTCCGGATGTTCATATTATTTTCAGATTTCAATAGGCAAACTTCCATCAATGATATTTAGAGTTAATTGGCTG

>Glyma15g03440.3   sequence type=transcript   gene model=Glyma15g03440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAGTTGACTTTGGTTGTAAGTGTCCAACGAGGCATTGACATGCAAGGTGAGGTACACAGGAGCGGTAATATGGTGTTCCACACCTGAATCTCAACTCCTCTGTTCTGATTCTGAATGAATCTGCTTCTGCTGTCTCTGCACGGAACACAAAAACATAAAAAGTTCATTTTCACAATCACGGTCGCTTCCTACGACTATCGAATTCGCGTCAGCCTCAATTCTCATGTTTAGCGACTTTTGCTGAAGACCCGGAAATTCCTTTTGATGCTCTGTTTCGCGTGAGAGAATTTTGGAGAAAGGAAATGAAAAGCCATTCGAAGTTGAAATTTTTTTAATTTTCTTTTTCTTTTTGGCTGGAACGGGAAACGTTTAATGACTTTTGGACTCGTTTGCTTGGCTTCGACTAATGCATTACTCACCTTTAGGATGATACTGTTTTGGGGTGCAAATTCTTCACTCTGTTATGATGGAGTTTGGGATTGATGCCTCCATTAATGGTGAGACAGTAGGAAATGCTACTATAGTGCAGATTAATAGCAGCACAGCTGATGGAAACAAAGTGGGCTGCAGTTCTTTTAATCCTGCTTATAAACAAGGTCATGATGATAATATAACTCAAGATTCTTCTGGAGGGGACACAATCCCATCAGGAATTCCTGCAGTATCGGTTGCGTCAGTTGATGAGCCCTATGTGGGCCAGGAGTTTGAATCTGAAGCTGCAGCACATGCATTCTATAATGCATATGCTAAACGTGTTGGATTCATCATACGTGTAAGTAAGCTCTCACGATCAAGGCGTGATGGAACTGCTATTGGACGGGCTCTTGTTTGCAACAGAGAAGGTTACAGAATGCCCGACAAACGTGAAAAGATTGTAAGGCAAAGGGCGGAGACAAGGGTTGGTTGCAGGGCAATGATTTTGGTGAGGAAAGTAAGTTCTGGTAAATGGGTTATTACAAAGTTTATAATGGAACACACACATCCTTTGACACCTGGAAAAGGTAGAAGAGATTGCATTTATGAGCAATATCCGAATGAACATGATAAAATTCGAGAACTATCCCAGCAGTTGGCTATAGAGAGAAAGCGATCTGCAACCTATAAAAGGCATCTTGAATTGATATTTGAGCAAATTGAAGAGCACAATGATAGTCTTTCAAAGAAAATACAACACATAGTGGACAGTGTGAAGGAGATGGAAACCAAAGAACAGAATCAGAGATAGCTTGAGCTCAGTTATCTAGTCTTTTAATTCTTTTCCACTGGATGAAACATGCAATCAACTGTTCAGGTCAAAAGTGCTGCTAGAAATATCGTGCAATAATATAGTTGCTGACCTAGGTATCAGCTTTAGGTGTCAGCTGAGTTCTGTAGTTCAATTTGCCAAGCTCAATGGAACTCAATAATCCATTGGATTGCTTTATATGCAGTGATATTTATAGTTCAGTCAATGTACAGGTCCTTTGAATCCATTCTTCTGAAGTTACACTAACAATGTGTGACTCATAACAGGCATGCAAATGCCTTGACAGAATTAAATTGTTCCACTTCCGTTGTTAATGTTGTACAGTTTGATCCATGGCTGTGTTCTTTGTATAACATTTACATTAAATAATGTTGAGAATGCACAGTCCGGATGTTCATATTATTTTCAGATTTCAATAGGCAAACTTCCATCAATGATATTTAGAGTTAATTGGCTG

Coding sequences of Glyma15g03440

Limit To All Plant Sequences

>Glyma15g03440.1   sequence type=CDS   gene model=Glyma15g03440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATCTGCTTCTGCTGTCTCTGCACGGAACACAAAAACATAAAAAGTTCATTTTCACAATCACGGTCGCTTCCTACGACTATCGAATTCGCGTCAGCCTCAATTCTCAATCTTTTGTTGCTGCAGTGGAGTTTGGGATTGATGCCTCCATTAATGGTGAGACAGTAGGAAATGCTACTATAGTGCAGATTAATAGCAGCACAGCTGATGGAAACAAAGTGGGCTGCAGTTCTTTTAATCCTGCTTATAAACAAGGTCATGATGATAATATAACTCAAGATTCTTCTGGAGGGGACACAATCCCATCAGGAATTCCTGCAGTATCGGTTGCGTCAGTTGATGAGCCCTATGTGGGCCAGGAGTTTGAATCTGAAGCTGCAGCACATGCATTCTATAATGCATATGCTAAACGTGTTGGATTCATCATACGTGTAAGTAAGCTCTCACGATCAAGGCGTGATGGAACTGCTATTGGACGGGCTCTTGTTTGCAACAGAGAAGGTTACAGAATGCCCGACAAACGTGAAAAGATTGTAAGGCAAAGGGCGGAGACAAGGGTTGGTTGCAGGGCAATGATTTTGGTGAGGAAAGTAAGTTCTGGTAAATGGGTTATTACAAAGTTTATAATGGAACACACACATCCTTTGACACCTGGAAAAGGTAGAAGAGATTGCATTTATGAGCAATATCCGAATGAACATGATAAAATTCGAGAACTATCCCAGCAGTTGGCTATAGAGAGAAAGCGATCTGCAACCTATAAAAGGCATCTTGAATTGATATTTGAGCAAATTGAAGAGCACAATGATAGTCTTTCAAAGAAAATACAACACATAGTGGACAGTGTGAAGGAGATGGAAACCAAAGAACAGAATCAGAGATAG

>Glyma15g03440.2   sequence type=CDS   gene model=Glyma15g03440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTTTGGGATTGATGCCTCCATTAATGGTGAGACAGTAGGAAATGCTACTATAGTGCAGATTAATAGCAGCACAGCTGATGGAAACAAAGTGGGCTGCAGTTCTTTTAATCCTGCTTATAAACAAGGTCATGATGATAATATAACTCAAGATTCTTCTGGAGGGGACACAATCCCATCAGGAATTCCTGCAGTATCGGTTGCGTCAGTTGATGAGCCCTATGTGGGCCAGGAGTTTGAATCTGAAGCTGCAGCACATGCATTCTATAATGCATATGCTAAACGTGTTGGATTCATCATACGTGTAAGTAAGCTCTCACGATCAAGGCGTGATGGAACTGCTATTGGACGGGCTCTTGTTTGCAACAGAGAAGGTTACAGAATGCCCGACAAACGTGAAAAGATTGTAAGGCAAAGGGCGGAGACAAGGGTTGGTTGCAGGGCAATGATTTTGGTGAGGAAAGTAAGTTCTGGTAAATGGGTTATTACAAAGTTTATAATGGAACACACACATCCTTTGACACCTGGAAAAGGTAGAAGAGATTGCATTTATGAGCAATATCCGAATGAACATGATAAAATTCGAGAACTATCCCAGCAGTTGGCTATAGAGAGAAAGCGATCTGCAACCTATAAAAGGCATCTTGAATTGATATTTGAGCAAATTGAAGAGCACAATGATAGTCTTTCAAAGAAAATACAACACATAGTGGACAGTGTGAAGGAGATGGAAACCAAAGAACAGAATCAGAGATAG

>Glyma15g03440.3   sequence type=CDS   gene model=Glyma15g03440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGAGTTTGGGATTGATGCCTCCATTAATGGTGAGACAGTAGGAAATGCTACTATAGTGCAGATTAATAGCAGCACAGCTGATGGAAACAAAGTGGGCTGCAGTTCTTTTAATCCTGCTTATAAACAAGGTCATGATGATAATATAACTCAAGATTCTTCTGGAGGGGACACAATCCCATCAGGAATTCCTGCAGTATCGGTTGCGTCAGTTGATGAGCCCTATGTGGGCCAGGAGTTTGAATCTGAAGCTGCAGCACATGCATTCTATAATGCATATGCTAAACGTGTTGGATTCATCATACGTGTAAGTAAGCTCTCACGATCAAGGCGTGATGGAACTGCTATTGGACGGGCTCTTGTTTGCAACAGAGAAGGTTACAGAATGCCCGACAAACGTGAAAAGATTGTAAGGCAAAGGGCGGAGACAAGGGTTGGTTGCAGGGCAATGATTTTGGTGAGGAAAGTAAGTTCTGGTAAATGGGTTATTACAAAGTTTATAATGGAACACACACATCCTTTGACACCTGGAAAAGGTAGAAGAGATTGCATTTATGAGCAATATCCGAATGAACATGATAAAATTCGAGAACTATCCCAGCAGTTGGCTATAGAGAGAAAGCGATCTGCAACCTATAAAAGGCATCTTGAATTGATATTTGAGCAAATTGAAGAGCACAATGATAGTCTTTCAAAGAAAATACAACACATAGTGGACAGTGTGAAGGAGATGGAAACCAAAGAACAGAATCAGAGATAG

Predicted protein sequences of Glyma15g03440

Limit To All Plant Sequences

>Glyma15g03440.1   sequence type=predicted peptide   gene model=Glyma15g03440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNLLLLSLHGTQKHKKFIFTITVASYDYRIRVSLNSQSFVAAVEFGIDASINGETVGNATIVQINSSTADGNKVGCSSFNPAYKQGHDDNITQDSSGGDTIPSGIPAVSVASVDEPYVGQEFESEAAAHAFYNAYAKRVGFIIRVSKLSRSRRDGTAIGRALVCNREGYRMPDKREKIVRQRAETRVGCRAMILVRKVSSGKWVITKFIMEHTHPLTPGKGRRDCIYEQYPNEHDKIRELSQQLAIERKRSATYKRHLELIFEQIEEHNDSLSKKIQHIVDSVKEMETKEQNQR*

>Glyma15g03440.2   sequence type=predicted peptide   gene model=Glyma15g03440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEFGIDASINGETVGNATIVQINSSTADGNKVGCSSFNPAYKQGHDDNITQDSSGGDTIPSGIPAVSVASVDEPYVGQEFESEAAAHAFYNAYAKRVGFIIRVSKLSRSRRDGTAIGRALVCNREGYRMPDKREKIVRQRAETRVGCRAMILVRKVSSGKWVITKFIMEHTHPLTPGKGRRDCIYEQYPNEHDKIRELSQQLAIERKRSATYKRHLELIFEQIEEHNDSLSKKIQHIVDSVKEMETKEQNQR*

>Glyma15g03440.3   sequence type=predicted peptide   gene model=Glyma15g03440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMEFGIDASINGETVGNATIVQINSSTADGNKVGCSSFNPAYKQGHDDNITQDSSGGDTIPSGIPAVSVASVDEPYVGQEFESEAAAHAFYNAYAKRVGFIIRVSKLSRSRRDGTAIGRALVCNREGYRMPDKREKIVRQRAETRVGCRAMILVRKVSSGKWVITKFIMEHTHPLTPGKGRRDCIYEQYPNEHDKIRELSQQLAIERKRSATYKRHLELIFEQIEEHNDSLSKKIQHIVDSVKEMETKEQNQR*

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