Report for Sequence Feature Glyma15g03420
Feature Type: gene_model
Chromosome: Gm15
Start: 2384942
stop: 2387571
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g03420
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G59490 AT
Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:21984660-21986262 REVERSE LENGTH=293
SoyBase E_val: 9.00E-115 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_I1MD60 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MD60_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g03420
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma15g03420 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g029700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g03420
Coding sequences of Glyma15g03420
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g03420.1 sequence type=CDS gene model=Glyma15g03420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAGCAGCGTCAGAGTTAGACCAAGGTATGAAGGTGTTGGATTCGTGTTTAGCGAATATCAATTGGCGCCTCAAACCTTCTTCCAAGCGTCGCTTACAATTAGATGTTCTCGCTCTCATTACAAGAATGAGAGCGGTTGTAATGGTAGACTACGGTGGAATCATGCCTCAGCTCCAGCACCACCTCTCTTCCCTCCTCCAACTCGCACTAAGGGATTCCCCCTCTATTTTCGAGCACATACGAGTTATGGTTATACAAGACATGATTTACTTAATACACATAACCGAAATTGCGCACTTTGTCAGATCAAGCTTCAACTCTCAACAACATCCGTTGCTCTTTGTTGACCTTGAACATCAACCCCCTAAGATGATAACACAAATTGAGGAAAGCCAATTAGCAATGCAGCTAGTATCCATTCAGAGGTTGTTTTTGACAGTATTCTCACCCGAGGAACCTAAATCTGCGGATGATCCTAAAGCCAACGCCAACGCCAACGCCGCGTGCCAGAGCTCTTCCTCTCCTTCTGCTCACTGCATTGATCTCAGTAACTGCATGGACAACACTGACATCACTGTGCCAACCTTGAATGGATGGCTTCTAGGCTACCCGGTGGTGTATCTCTTTGGCAAGGACCATATTTCTGATGCCATTTATCATCTTTCGACCAAATATCTTCATATTTTTCAAGTGTTTGTCTGCAGGAACAGTACTCTCAAGAAAGGGACTCAAGCTGAAGAGCTGTTAAGTTTTTCAGTGCCTTACGATCTAAGCATGAGAGGGAGTAATGAACAATGGGCAGAGGCTTTTCTGGCTCACATGCAGGCAAAGTGGGAAAGGTGTGCAAGTGCTTGGAAGTCGTTAAAGATGGAGGTTAGTGAATGTCATCCTCAAGCTATCGTGTTATAA
Predicted protein sequences of Glyma15g03420
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g03420.1 sequence type=predicted peptide gene model=Glyma15g03420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEAASELDQGMKVLDSCLANINWRLKPSSKRRLQLDVLALITRMRAVVMVDYGGIMPQLQHHLSSLLQLALRDSPSIFEHIRVMVIQDMIYLIHITEIAHFVRSSFNSQQHPLLFVDLEHQPPKMITQIEESQLAMQLVSIQRLFLTVFSPEEPKSADDPKANANANAACQSSSSPSAHCIDLSNCMDNTDITVPTLNGWLLGYPVVYLFGKDHISDAIYHLSTKYLHIFQVFVCRNSTLKKGTQAEELLSFSVPYDLSMRGSNEQWAEAFLAHMQAKWERCASAWKSLKMEVSECHPQAIVL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
