Glyma15g03210 - SoyBase

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Report for Sequence Feature Glyma15g03210

Feature Type:	gene_model
Chromosome:	Gm15
Start:	2223067
stop:	2226329
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g03210

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G07560	AT	Annotation by Michelle Graham. TAIR10: peroxin 13 \| chr3:2411616-2413310 REVERSE LENGTH=304	SoyBase	E_val: 1.00E-57	ISS
GO:0006605	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting	SoyBase	N/A	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0006869	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid transport	SoyBase	N/A	ISS
GO:0006891	GO-bp	Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0010351	GO-bp	Annotation by Michelle Graham. GO Biological Process: lithium ion transport	SoyBase	N/A	ISS
GO:0016558	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix	SoyBase	N/A	ISS
GO:0044265	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular macromolecule catabolic process	SoyBase	N/A	ISS
GO:0005778	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisomal membrane	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
UniRef100_B9U2H7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peroxisome biogenesis factor 13 n=1 Tax=Nicotiana tabacum RepID=B9U2H7_TOBAC	SoyBase	E_val: 9.00E-97	ISS
UniRef100_I1MD37	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MD37_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g03210

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g03210 not represented in the dataset	Glyma15g03210 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g03210

Paralog	Evidence	Comments
Glyma13g42170	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g03210 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g027800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g03210

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g03210

Limit To All Plant Sequences

>Glyma15g03210.4   sequence type=transcript   gene model=Glyma15g03210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTGCACTTTACACACCTCAAGGCATTGGGCCCACTTTAGAATATAGAAAATTAGAAGACGAAGATGCTGCCAAAACCCGCCCCCGTCTTGTAATTGTAAAGCCACCACAATCGCTACCCTTGGCTGCAAGCTTAAGCCTAAGCCTGAGACATACCATAGAGAAAGTGATTCAATTAATATATTATATGGTGTTTCTCTTCAATTCCCATGGAGCCTAAGACACAACCTCAAGCGAATAGTCCTCCACCAAAACCTTGGGAACAAGCGGGTTCCTCTTCTGGTCCAGCACCTTTCAAACCTCCGTCAGCTGGCAACACAAGTGATGTAGTTGAGGCTTCAGGGACTGCAAAACCTGGGGAAATTGTTTCTAGTTCTGATAGGAGTGCAGCTGTCAACAGGAATACTCTTGGGAGGCCTGTTCCCTCCAGGCCATGGGAGCAGAATTATGGAAACAGCACCTATGGAGGATATGGTTCTACAATGAATTATAATTCTGGGTATGGATCTGGAATGTATGGATCTTCTTATGGTGGACTAGGAGGTGGAATGTATGGATCTTCATATGGTGGGGGGATGTATGGTAACAGTATGTACAGGGGAGGATATGGTGGCCTGCATGGGTCATCCGGGATGTACGGAGGTGGAATGTATAACAGTGCCTTAGGGGGTCCAATTGGTGGTTATGGCATGGGTGGTGGTCCTTATGGAGATCAAGATCCGAACGATCCGTTCGGTGCCCCTCCTTCTCCTCCTGGATTTTGGATTTCCGTCCTACGTGTGATGCAAGGTGTGGTTAACTTTTTTGGTCGAATATCAATACTCATAGACCAGAACACACAGGCTTTCCATTTGTTCATGACTGCACTTCTCCAGGTTTTGTATTCTTCATTTTTGTCTTGTTGCTAATTGTATACCCATCTTCTGTAGCTGTTGGAAGATTGAAATTCAAGTGAAAAATGGAATCATATATGTTCTGTTTATATGTTTTGGATTGATGTGAAATTGTTGCTTTTGGCAGGATCACTTATACAATATTTGACTGGATTTTTTTACATCATTTTTTTCGTATTGGAAAGTAACTAAACAATCTGGTCTAAGCAAATTACAGAATTATAGCCTATTCCGGCAAAACCAAAGCAAGTTCCTCCAGAATGCACTCTACCTTGTGTGATATTTATATTAATATAGCACTTATCCTGTTAGGTATTCTATTTTCTTTATTTTCTCTGCACAATGCACAGTGCCAAATTTGGGAACCCATTCTGTAATATAATAATCACTTGCATTTTATCATCGTATGAACGCAGTTTAATTTAGATGATTACTTGATCTCTATTGCAGCTGTTTGACCGCTCTGGAATGTTGTATGGAGAGCTAGCTAGATTTGTGTTGCGGTTGCTTGGGATTAGAACGAAGTCCAAGAAGGTTTACCCGCCAGGTCCAAATGGACAGCCGCTGCTTGGACCTGGACCACACAATCCTTCCGGAAATGTAAACTACATTGAGGCACCAAAGGCTGCTCCAAGTGGTTCTTGGGACAACGTTTGGGGAAATGACGCCAATCAATGATACGGTATGTTATTCTGCTAAAAGAGTTCGTCCAAATACATTGAAAAGAAGAAACAGCTGCATTCATTATGAAGATACTGAAACTGCAGAAGTCATGTATATCCTGGGATTAAAATTGAGTTTGCTATTTTCTCTTTGCTTGCGTTGGCTCTTGATTTTACTAGAAAGGGGATCTTAAATAGGATACCATCCCTGCATTATACCTTGTAAGCGTTTTGTTTGAATCCTTACATGTATTATCTTATCCCTAGCGTAATATTGCATACCTGCATTAAGATTTTCGGGCGACCTTTAATTACGTTTCTTTTCGTGTGCTCGTAATGTGAATATTCCTCAAGTTTGCTTTACGCATGGTTCTGCCAAACATCGGTGTGATTATATGAAGTCGGCGTTAAGTTTTAGGTTTAATTGCAGTTTAATTCCA

>Glyma15g03210.5   sequence type=transcript   gene model=Glyma15g03210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTGCACTTTACACACCTCAAGGCATTGGGCCCACTTTAGAATATAGAAAATTAGAAGACGAAGATGCTGCCAAAACCCGCCCCCGTCTTGTAATTGTAAAGCCACCACAATCGCTACCCTTGGCTGCAAGCTTAAGCCTAAGCCTGAGACATACCATAGAGAAAGTGATTCAATTAATATATTATATGGTGTTTCTCTTCAATTCCCATGGAGCCTAAGACACAACCTCAAGCGAATAGTCCTCCACCAAAACCTTGGGAACAAGCGGGTTCCTCTTCTGGTCCAGCACCTTTCAAACCTCCGTCAGCTGGCAACACAAGTGATGTAGTTGAGGCTTCAGGGACTGCAAAACCTGGGGAAATTGTTTCTAGTTCTGATAGGAGTGCAGCTGTCAACAGGAATACTCTTGGGAGGCCTGTTCCCTCCAGGCCATGGGAGCAGAATTATGGAAACAGCACCTATGGAGGATATGGTTCTACAATGAATTATAATTCTGGGTATGGATCTGGAATGTATGGATCTTCTTATGGTGGACTAGGAGGTGGAATGTATGGATCTTCATATGGTGGGGGGATGTATGGTAACAGTATGTACAGGGGAGGATATGGTGGCCTGCATGGGTCATCCGGGATGTACGGAGGTGGAATGTATAACAGTGCCTTAGGGGGTCCAATTGGTGGTTATGGCATGGGTGGTGGTCCTTATGGAGATCAAGATCCGAACGATCCGTTCGGTGCCCCTCCTTCTCCTCCTGGATTTTGGATTTCCGTCCTACGTGTGATGCAAGGTGTGGTTAACTTTTTTGGTCGAATATCAATACTCATAGACCAGAACACACAGGCTTTCCATTTGTTCATGACTGCACTTCTCCAGGTTTTGTATTCTTCATTTTTGTCTTGTTGCTAATTGTATACCCATCTTCTGTAGCTGTTGGAAGATTGAAATTCAAGTGAAAAATGGAATCATATATGTTCTGTTTATATGTTTTGGATTGATGTGAAATTGTTGCTTTTGGCAGGATCACTTATACAATATTTGACTGGATTTTTTTACATCATTTTTTTCGTATTGGAAAGTAACTAAACAATCTGGTCTAAGCAAATTACAGAATTATAGCCTATTCCGGCAAAACCAAAGCAAGTTCCTCCAGAATGCACTCTACCTTGTGTGATATTTATATTAATATAGCACTTATCCTGTTAGCTGTTTGACCGCTCTGGAATGTTGTATGGAGAGCTAGCTAGATTTGTGTTGCGGTTGCTTGGGATTAGAACGAAGTCCAAGAAGGTTTACCCGCCAGGTCCAAATGGACAGCCGCTGCTTGGACCTGGACCACACAATCCTTCCGGAAATGTAAACTACATTGAGGCACCAAAGGCTGCTCCAAGTGGTTCTTGGGACAACGTTTGGGGAAATGACGCCAATCAATGATACGGTATGTTATTCTGCTAAAAGAGTTCGTCCAAATACATTGAAAAGAAGAAACAGCTGCATTCATTATGAAGATACTGAAACTGCAGAAGTCATGTATATCCTGGGATTAAAATTGAGTTTGCTATTTTCTCTTTGCTTGCGTTGGCTCTTGATTTTACTAGAAAGGGGATCTTAAATAGGATACCATCCCTGCATTATACCTTGTAAGCGTTTTGTTTGAATCCTTACATGTATTATCTTATCCCTAGCGTAATATTGCATACCTGCATTAAGATTTTCGGGCGACCTTTAATTACGTTTCTTTTCGTGTGCTCGTAATGTGAATATTCCTCAAGTTTGCTTTACGCATGGTTCTGCCAAACATCGGTGTGATTATATGAAGTCGGCGTTAAGTTTTAGGTTTAATTGCAGTTTAATTCCA

Coding sequences of Glyma15g03210

Limit To All Plant Sequences

>Glyma15g03210.1   sequence type=CDS   gene model=Glyma15g03210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCCTAAGACACAACCTCAAGCGAATAGTCCTCCACCAAAACCTTGGGAACAAGCGGGTTCCTCTTCTGGTCCAGCACCTTTCAAACCTCCGTCAGCTGGCAACACAAGTGATGTAGTTGAGGCTTCAGGGACTGCAAAACCTGGGGAAATTGTTTCTAGTTCTGATAGGAGTGCAGCTGTCAACAGGAATACTCTTGGGAGGCCTGTTCCCTCCAGGCCATGGGAGCAGAATTATGGAAACAGCACCTATGGAGGATATGGTTCTACAATGAATTATAATTCTGGGTATGGATCTGGAATGTATGGATCTTCTTATGGTGGACTAGGAGGTGGAATGTATGGATCTTCATATGGTGGGGGGATGTATGGTAACAGTATGTACAGGGGAGGATATGGTGGCCTGCATGGGTCATCCGGGATGTACGGAGGTGGAATGTATAACAGTGCCTTAGGGGGTCCAATTGGTGGTTATGGCATGGGTGGTGGTCCTTATGGAGATCAAGATCCGAACGATCCGTTCGGTGCCCCTCCTTCTCCTCCTGGATTTTGGATTTCCGTCCTACGTGTGATGCAAGGTGTGGTTAACTTTTTTGGTCGAATATCAATACTCATAGACCAGAACACACAGGCTTTCCATTTGTTCATGACTGCACTTCTCCAGCTGTTTGACCGCTCTGGAATGTTGTATGGAGAGCTAGCTAGATTTGTGTTGCGGTTGCTTGGGATTAGAACGAAGTCCAAGAAGGTTTACCCGCCAGGTCCAAATGGACAGCCGCTGCTTGGACCTGGACCACACAATCCTTCCGGAAATGTAAACTACATTGAGGCACCAAAGGCTGCTCCAAGTGGTTCTTGGGACAACGTTTGGGGAAATGACGCCAATCAATGA

>Glyma15g03210.4   sequence type=CDS   gene model=Glyma15g03210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCCTAAGACACAACCTCAAGCGAATAGTCCTCCACCAAAACCTTGGGAACAAGCGGGTTCCTCTTCTGGTCCAGCACCTTTCAAACCTCCGTCAGCTGGCAACACAAGTGATGTAGTTGAGGCTTCAGGGACTGCAAAACCTGGGGAAATTGTTTCTAGTTCTGATAGGAGTGCAGCTGTCAACAGGAATACTCTTGGGAGGCCTGTTCCCTCCAGGCCATGGGAGCAGAATTATGGAAACAGCACCTATGGAGGATATGGTTCTACAATGAATTATAATTCTGGGTATGGATCTGGAATGTATGGATCTTCTTATGGTGGACTAGGAGGTGGAATGTATGGATCTTCATATGGTGGGGGGATGTATGGTAACAGTATGTACAGGGGAGGATATGGTGGCCTGCATGGGTCATCCGGGATGTACGGAGGTGGAATGTATAACAGTGCCTTAGGGGGTCCAATTGGTGGTTATGGCATGGGTGGTGGTCCTTATGGAGATCAAGATCCGAACGATCCGTTCGGTGCCCCTCCTTCTCCTCCTGGATTTTGGATTTCCGTCCTACGTGTGATGCAAGGTGTGGTTAACTTTTTTGGTCGAATATCAATACTCATAGACCAGAACACACAGGCTTTCCATTTGTTCATGACTGCACTTCTCCAGGTTTTGTATTCTTCATTTTTGTCTTGTTGCTAA

>Glyma15g03210.5   sequence type=CDS   gene model=Glyma15g03210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCCTAAGACACAACCTCAAGCGAATAGTCCTCCACCAAAACCTTGGGAACAAGCGGGTTCCTCTTCTGGTCCAGCACCTTTCAAACCTCCGTCAGCTGGCAACACAAGTGATGTAGTTGAGGCTTCAGGGACTGCAAAACCTGGGGAAATTGTTTCTAGTTCTGATAGGAGTGCAGCTGTCAACAGGAATACTCTTGGGAGGCCTGTTCCCTCCAGGCCATGGGAGCAGAATTATGGAAACAGCACCTATGGAGGATATGGTTCTACAATGAATTATAATTCTGGGTATGGATCTGGAATGTATGGATCTTCTTATGGTGGACTAGGAGGTGGAATGTATGGATCTTCATATGGTGGGGGGATGTATGGTAACAGTATGTACAGGGGAGGATATGGTGGCCTGCATGGGTCATCCGGGATGTACGGAGGTGGAATGTATAACAGTGCCTTAGGGGGTCCAATTGGTGGTTATGGCATGGGTGGTGGTCCTTATGGAGATCAAGATCCGAACGATCCGTTCGGTGCCCCTCCTTCTCCTCCTGGATTTTGGATTTCCGTCCTACGTGTGATGCAAGGTGTGGTTAACTTTTTTGGTCGAATATCAATACTCATAGACCAGAACACACAGGCTTTCCATTTGTTCATGACTGCACTTCTCCAGGTTTTGTATTCTTCATTTTTGTCTTGTTGCTAA

Predicted protein sequences of Glyma15g03210

Limit To All Plant Sequences

>Glyma15g03210.1   sequence type=predicted peptide   gene model=Glyma15g03210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEPKTQPQANSPPPKPWEQAGSSSGPAPFKPPSAGNTSDVVEASGTAKPGEIVSSSDRSAAVNRNTLGRPVPSRPWEQNYGNSTYGGYGSTMNYNSGYGSGMYGSSYGGLGGGMYGSSYGGGMYGNSMYRGGYGGLHGSSGMYGGGMYNSALGGPIGGYGMGGGPYGDQDPNDPFGAPPSPPGFWISVLRVMQGVVNFFGRISILIDQNTQAFHLFMTALLQLFDRSGMLYGELARFVLRLLGIRTKSKKVYPPGPNGQPLLGPGPHNPSGNVNYIEAPKAAPSGSWDNVWGNDANQ*

>Glyma15g03210.4   sequence type=predicted peptide   gene model=Glyma15g03210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEPKTQPQANSPPPKPWEQAGSSSGPAPFKPPSAGNTSDVVEASGTAKPGEIVSSSDRSAAVNRNTLGRPVPSRPWEQNYGNSTYGGYGSTMNYNSGYGSGMYGSSYGGLGGGMYGSSYGGGMYGNSMYRGGYGGLHGSSGMYGGGMYNSALGGPIGGYGMGGGPYGDQDPNDPFGAPPSPPGFWISVLRVMQGVVNFFGRISILIDQNTQAFHLFMTALLQVLYSSFLSCC*

>Glyma15g03210.5   sequence type=predicted peptide   gene model=Glyma15g03210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEPKTQPQANSPPPKPWEQAGSSSGPAPFKPPSAGNTSDVVEASGTAKPGEIVSSSDRSAAVNRNTLGRPVPSRPWEQNYGNSTYGGYGSTMNYNSGYGSGMYGSSYGGLGGGMYGSSYGGGMYGNSMYRGGYGGLHGSSGMYGGGMYNSALGGPIGGYGMGGGPYGDQDPNDPFGAPPSPPGFWISVLRVMQGVVNFFGRISILIDQNTQAFHLFMTALLQVLYSSFLSCC*

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