SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G72830 | AT | Annotation by Michelle Graham. TAIR10: nuclear factor Y, subunit A3 | chr1:27405699-27407088 REVERSE LENGTH=340 | SoyBase | E_val: 4.00E-36 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0045892 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0016602 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: CCAAT-binding factor complex | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| PTHR12632 | Panther | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | JGI | ISS | |
| PTHR12632:SF5 | Panther | TRANSCRIPTIONAL ACTIVATOR PHP2-RELATED | JGI | ISS | |
| PF02045 | PFAM | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | JGI | ISS | |
| UniRef100_G7IS22 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Nuclear transcription factor Y subunit A-3 n=1 Tax=Medicago truncatula RepID=G7IS22_MEDTR | SoyBase | E_val: 4.00E-79 | ISS |
| UniRef100_G7IS22 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nuclear transcription factor Y subunit A-3 n=1 Tax=Medicago truncatula RepID=G7IS22_MEDTR | SoyBase | E_val: 4.00E-79 | ISS |
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Glyma15g03175 not represented in the dataset |
Glyma15g03175 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g027400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g03175.2 sequence type=transcript gene model=Glyma15g03175 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTTTTTTAAACCAGCCAAGAAAGAATAACAATAGGGACAACAAAACGAAAAAGATAGAATGCATAAGGATAAATTATTTTTAATTCAAATATATTTTAAAATTAGATTCTTAATTTTAAAAATGATTTTTCTATTTTAACATAAGTTGGGAGGGTGGCAGATGAGTGTAGTTGGTGTGTTAATGCAACAGAGTCATTGTTTTTAAGACCAAGTAGAAGTCACTTTATGGGTCAAGACTTAGCACTAAAGCCAAGAGACCAAAAAGACTAAAACAATGATGGAGTCATTCAAGTGTTATGTTTGAGTGAGAGTCTTTTCTAAGCTTACGAAGTTTCAGGGCAGAAGACATGCACAGCTTCTGATTCCTCTCCAATTCATTCAACTTCCAAGGTGGATTATTGTTCTAAGAGGTAGGCCTTGAGCCAGAGTGGAAAACAATGAATTGCTTATGTGAGAAAGACTCTGGTCTATTTTCTTCTCATTCAACAGCTCCCTATGTTCTTGGATGCCCATCATGGGCGACTTCTGAATTTGAAGTCCAACGATCATCTATGTCCAGAAGTTTGAGCTCAAAAGTGGATGTTCTTCCACAACAATGCCACAATAGCAAGACATTTAATTTTCAATTCCAAGAACAGGATGCATCTTCAACCAAATCCACTGATCAATCTTATCCAGAAGTTGGTCAAATTTCTGTCCAGCATAGTTCTACTGATTCAACACTTATCAGAAATGAGGGGAAGAGTATGGGATGTGTCATCAGGTCATTTATGGGGAGTCAGGATTTCCCTTTCCCTCCTCCACTACTGGATCACAGACCAATACTTCCAGTGGAAACTGCTCCTGTTCGAATTCCTCTTCAATTGGATTTTGCAGAAGAACCTATATACGTGAATTCAAAGCAGTACCATGCTATTCTGAGGCGAAGACAGTATCGAGCAAAACTCGAAGCGCTTAACAAACCCATCAAGGATCGGAAACCGTATCTTCACGAGTCCCGCCATCAACATGCACTGAAGAGAGCTAGAGGCGCTGGTGGACGCTTTCTCAATACAAAAAAACAATTACAATCAAATCATACACCTGGGAATATTGCAGAATCAAAAATGCATCACATTGAAAACTATAGAGATGGTGCTGATGTCTCATATGCATTTAACAGTGATGCAAGAAACATGCAGAATGATGCAGCTGATAAGGGTGGTGGCACCACTCAGCAACCTCTATTTGTCTACATGTGACTAAACTGGCTTGTTGTTGGGCACATCACTTTGCTTGTGTTGTGTTCCATTGGGAAGTCATCCTTGGCTCATCTTTTATTATGTAGTTACGATTATTGCTAATTTTGATTTTCGTCGACATTGACATGGACGTATTGTATACCCTAAAATTGTTTGACACTGACTTGTCAAAAACAATGTTTTTCTATGTTAATACCATATCTGCAACATGTCTAATTGAAATGCGATTATG >Glyma15g03175.3 sequence type=transcript gene model=Glyma15g03175 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTTTTTTAAACCAGCCAAGAAAGAATAACAATAGGGACAACAAAACGAAAAAGATAGAATGCATAAGGATAAATTATTTTTAATTCAAATATATTTTAAAATTAGATTCTTAATTTTAAAAATGATTTTTCTATTTTAACATAAGTTGGGAGGGTGGCAGATGAGTGTAGTTGGTGTGTTAATGCAACAGAGTCATTGTTTTTAAGACCAAGTAGAAGTCACTTTATGGGTCAAGACTTAGCACTAAAGCCAAGAGACCAAAAAGACTAAAACAATGATGGAGTCATTCAAGTGTTATGTTTGAGTGAGAGTCTTTTCTAAGCTTACGAAGTTTCAGGGCAGAAGACATGCACAGCTTCTGATTCCTCTCCAATTCATTCAACTTCCAAGGTAGGTGGATTATTGTTCTAAGAGGTAGGCCTTGAGCCAGAGTGGAAAACAATGAATTGCTTATGTGAGAAAGACTCTGGTCTATTTTCTTCTCATTCAACAGCTCCCTATGTTCTTGGATGCCCATCATGGGCGACTTCTGAATTTGAAGTCCAACGATCATCTATGTCCAGAAGTTTGAGCTCAAAAGTGGATGTTCTTCCACAACAATGCCACAATAGCAAGACATTTAATTTTCAATTCCAAGAACAGGATGCATCTTCAACCAAATCCACTGATCAATCTTATCCAGAAGTTGGTCAAATTTCTGTCCAGCATAGTTCTACTGATTCAACACTTATCAGAAATGAGGGGAAGAGTATGGGATGTGTCATCAGGTCATTTATGGGGAGTCAGGATTTCCCTTTCCCTCCTCCACTACTGGATCACAGACCAATACTTCCAGTGGAAACTGCTCCTGTTCGAATTCCTCTTCAATTGGATTTTGCAGAAGAACCTATATACGTGAATTCAAAGCAGTACCATGCTATTCTGAGGCGAAGACAGTATCGAGCAAAACTCGAAGCGCTTAACAAACCCATCAAGGATCGGAAACCGTATCTTCACGAGTCCCGCCATCAACATGCACTGAAGAGAGCTAGAGGCGCTGGTGGACGCTTTCTCAATACAAAAAAACAATTACAATCAAATCATACACCTGGGAATATTGCAGAATCAAAAATGCATCACATTGAAAACTATAGAGATGGTGCTGATGTCTCATATGCATTTAACAGTGATGCAAGAAACATGCAGAATGATGCAGCTGATAAGGGTGGTGGCACCACTCAGCAACCTCTATTTGTCTACATGTGACTAAACTGGCTTGTTGTTGGGCACATCACTTTGCTTGTGTTGTGTTCCATTGGGAAGTCATCCTTGGCTCATCTTTTATTATGTAGTTACGATTATTGCTAATTTTGATTTTCGTCGACATTGACATGGACGTATTGTATACCCTAAAATTGTTTGACACTGACTTGTCAAAAACAATGTTTTTCTATGTTAATACCATATCTGCAACATGTCTAATTGAAATGCGATTATG
>Glyma15g03175.1 sequence type=CDS gene model=Glyma15g03175 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATTGCTTATGTGAGAAAGACTCTGGTCTATTTTCTTCTCATTCAACAGCTCCCTATGTTCTTGGATGCCCATCATGGGCGACTTCTGAATTTGAAGTCCAACGATCATCTATGTCCAGAAGTTTGAGCTCAAAAGTGGATGTTCTTCCACAACAATGCCACAATAGCAAGACATTTAATTTTCAATTCCAAGAACAGGATGCATCTTCAACCAAATCCACTGATCAATCTTATCCAGAAGTTGGTACGGTACAATCCGGTCAAATTTCTGTCCAGCATAGTTCTACTGATTCAACACTTATCAGAAATGAGGGGAAGAGTATGGGATGTGTCATCAGGTCATTTATGGGGAGTCAGGATTTCCCTTTCCCTCCTCCACTACTGGATCACAGACCAATACTTCCAGTGGAAACTGCTCCTGTTCGAATTCCTCTTCAATTGGATTTTGCAGAAGAACCTATATACGTGAATTCAAAGCAGTACCATGCTATTCTGAGGCGAAGACAGTATCGAGCAAAACTCGAAGCGCTTAACAAACCCATCAAGGATCGGAAACCGTATCTTCACGAGTCCCGCCATCAACATGCACTGAAGAGAGCTAGAGGCGCTGGTGGACGCTTTCTCAATACAAAAAAACAATTACAATCAAATCATACACCTGGGAATATTGCAGAATCAAAAATGCATCACATTGAAAACTATAGAGATGGTGCTGATGTCTCATATGCATTTAACAGTGATGCAAGAAACATGCAGAATGATGCAGCTGATAAGGGTGGTGGCACCACTCAGCAACCTCTATTTGTCTACATGTGA >Glyma15g03175.2 sequence type=CDS gene model=Glyma15g03175 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATTGCTTATGTGAGAAAGACTCTGGTCTATTTTCTTCTCATTCAACAGCTCCCTATGTTCTTGGATGCCCATCATGGGCGACTTCTGAATTTGAAGTCCAACGATCATCTATGTCCAGAAGTTTGAGCTCAAAAGTGGATGTTCTTCCACAACAATGCCACAATAGCAAGACATTTAATTTTCAATTCCAAGAACAGGATGCATCTTCAACCAAATCCACTGATCAATCTTATCCAGAAGTTGGTCAAATTTCTGTCCAGCATAGTTCTACTGATTCAACACTTATCAGAAATGAGGGGAAGAGTATGGGATGTGTCATCAGGTCATTTATGGGGAGTCAGGATTTCCCTTTCCCTCCTCCACTACTGGATCACAGACCAATACTTCCAGTGGAAACTGCTCCTGTTCGAATTCCTCTTCAATTGGATTTTGCAGAAGAACCTATATACGTGAATTCAAAGCAGTACCATGCTATTCTGAGGCGAAGACAGTATCGAGCAAAACTCGAAGCGCTTAACAAACCCATCAAGGATCGGAAACCGTATCTTCACGAGTCCCGCCATCAACATGCACTGAAGAGAGCTAGAGGCGCTGGTGGACGCTTTCTCAATACAAAAAAACAATTACAATCAAATCATACACCTGGGAATATTGCAGAATCAAAAATGCATCACATTGAAAACTATAGAGATGGTGCTGATGTCTCATATGCATTTAACAGTGATGCAAGAAACATGCAGAATGATGCAGCTGATAAGGGTGGTGGCACCACTCAGCAACCTCTATTTGTCTACATGTGA >Glyma15g03175.3 sequence type=CDS gene model=Glyma15g03175 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATTGCTTATGTGAGAAAGACTCTGGTCTATTTTCTTCTCATTCAACAGCTCCCTATGTTCTTGGATGCCCATCATGGGCGACTTCTGAATTTGAAGTCCAACGATCATCTATGTCCAGAAGTTTGAGCTCAAAAGTGGATGTTCTTCCACAACAATGCCACAATAGCAAGACATTTAATTTTCAATTCCAAGAACAGGATGCATCTTCAACCAAATCCACTGATCAATCTTATCCAGAAGTTGGTCAAATTTCTGTCCAGCATAGTTCTACTGATTCAACACTTATCAGAAATGAGGGGAAGAGTATGGGATGTGTCATCAGGTCATTTATGGGGAGTCAGGATTTCCCTTTCCCTCCTCCACTACTGGATCACAGACCAATACTTCCAGTGGAAACTGCTCCTGTTCGAATTCCTCTTCAATTGGATTTTGCAGAAGAACCTATATACGTGAATTCAAAGCAGTACCATGCTATTCTGAGGCGAAGACAGTATCGAGCAAAACTCGAAGCGCTTAACAAACCCATCAAGGATCGGAAACCGTATCTTCACGAGTCCCGCCATCAACATGCACTGAAGAGAGCTAGAGGCGCTGGTGGACGCTTTCTCAATACAAAAAAACAATTACAATCAAATCATACACCTGGGAATATTGCAGAATCAAAAATGCATCACATTGAAAACTATAGAGATGGTGCTGATGTCTCATATGCATTTAACAGTGATGCAAGAAACATGCAGAATGATGCAGCTGATAAGGGTGGTGGCACCACTCAGCAACCTCTATTTGTCTACATGTGA
>Glyma15g03175.1 sequence type=predicted peptide gene model=Glyma15g03175 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNCLCEKDSGLFSSHSTAPYVLGCPSWATSEFEVQRSSMSRSLSSKVDVLPQQCHNSKTFNFQFQEQDASSTKSTDQSYPEVGTVQSGQISVQHSSTDSTLIRNEGKSMGCVIRSFMGSQDFPFPPPLLDHRPILPVETAPVRIPLQLDFAEEPIYVNSKQYHAILRRRQYRAKLEALNKPIKDRKPYLHESRHQHALKRARGAGGRFLNTKKQLQSNHTPGNIAESKMHHIENYRDGADVSYAFNSDARNMQNDAADKGGGTTQQPLFVYM* >Glyma15g03175.2 sequence type=predicted peptide gene model=Glyma15g03175 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNCLCEKDSGLFSSHSTAPYVLGCPSWATSEFEVQRSSMSRSLSSKVDVLPQQCHNSKTFNFQFQEQDASSTKSTDQSYPEVGQISVQHSSTDSTLIRNEGKSMGCVIRSFMGSQDFPFPPPLLDHRPILPVETAPVRIPLQLDFAEEPIYVNSKQYHAILRRRQYRAKLEALNKPIKDRKPYLHESRHQHALKRARGAGGRFLNTKKQLQSNHTPGNIAESKMHHIENYRDGADVSYAFNSDARNMQNDAADKGGGTTQQPLFVYM* >Glyma15g03175.3 sequence type=predicted peptide gene model=Glyma15g03175 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNCLCEKDSGLFSSHSTAPYVLGCPSWATSEFEVQRSSMSRSLSSKVDVLPQQCHNSKTFNFQFQEQDASSTKSTDQSYPEVGQISVQHSSTDSTLIRNEGKSMGCVIRSFMGSQDFPFPPPLLDHRPILPVETAPVRIPLQLDFAEEPIYVNSKQYHAILRRRQYRAKLEALNKPIKDRKPYLHESRHQHALKRARGAGGRFLNTKKQLQSNHTPGNIAESKMHHIENYRDGADVSYAFNSDARNMQNDAADKGGGTTQQPLFVYM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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