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Report for Sequence Feature Glyma15g03050

Feature Type:gene_model
Chromosome:Gm15
Start:2142168
stop:2147466
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g03050
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G55020AT Annotation by Michelle Graham. TAIR10: lipoxygenase 1 | chr1:20525798-20530143 FORWARD LENGTH=859 SoyBaseE_val: 0ISS
GO:0006952GO-bp Annotation by Michelle Graham. GO Biological Process: defense response SoyBaseN/AISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009695GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0009816GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium, incompatible interaction SoyBaseN/AISS
GO:0010311GO-bp Annotation by Michelle Graham. GO Biological Process: lateral root formation SoyBaseN/AISS
GO:0030397GO-bp Annotation by Michelle Graham. GO Biological Process: membrane disassembly SoyBaseN/AISS
GO:0034440GO-bp Annotation by Michelle Graham. GO Biological Process: lipid oxidation SoyBaseN/AISS
GO:0040007GO-bp Annotation by Michelle Graham. GO Biological Process: growth SoyBaseN/AISS
GO:0048364GO-bp Annotation by Michelle Graham. GO Biological Process: root development SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0009536GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid SoyBaseN/AISS
GO:0016165GO-mf Annotation by Michelle Graham. GO Molecular Function: lipoxygenase activity SoyBaseN/AISS
PTHR11771Panther LIPOXYGENASE JGI ISS
PTHR11771:SF2Panther LIPOXYGENASE JGI ISS
PF00305PFAM Lipoxygenase JGI ISS
PF01477PFAM PLAT/LH2 domain JGI ISS
UniRef100_I1MD22UniRef Annotation by Michelle Graham. Best UniRef hit: Lipoxygenase n=1 Tax=Glycine max RepID=I1MD22_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1MD22UniRef Annotation by Michelle Graham. Most informative UniRef hit: Lipoxygenase n=1 Tax=Glycine max RepID=I1MD22_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma15g03050
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g03050
ParalogEvidenceComments
Glyma13g42330 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g03050 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g026500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g03050
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g03050
>Glyma15g03050.1   sequence type=CDS   gene model=Glyma15g03050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTCCATTCGGGCACAAGGGTCAAAAGATAAAGGGGACTATGGTGGTTATGCAGAAGAATGTGTTGGATATCAACAGCATCACCAGTGTTGACGGGATCGTCGGCACCGGCTTAGACTTCTTAGGCAGTGCACTCGATACAGTTACTTTTTTAGCCTCCTCCATCTCCATCCAACTTATTAGTGCTACCAAGGCTGATGGTGGGAAAGGAAAAGTTGGAAAGGCTACAAATTTGAGAGGAAAGATAACATTACCAACCATAGGAGCTAAGGAAGAAGCATACGATGCTCAATTTGATTGGGACAGTGACTTCGGAATTCCCGGTGCATTTTATATTAAGAACTTCATGCAAAACGAGTTCTACCTCAAGTCTTTAATTCTCGAAGACATTCCAAACCATGGAACCATTCACTTCATATGTAACTCCTGGGTTTACAATTCAAAACACTACAAGACTGATCGCATTTTCTTTGCCAACAATACATATCTTCCAAGCGAGACACCGGCTCCACTTGTCAAGTACAGAGAAGAAGAATTGAAGAATGTAAGAGGGGATGGAACTGGTGAGCGCAAGGAATGGGATAGGATCTATGATTATGATGTCTACAATGACTTGGGCGATCCAGATAAGGGTGAAAAGTATGCACGCCCCGTTCTTGGAGGTTCTGCCTTACCTTACCCTCGCAGAGGAAGAACCGGAAGAGGAAAAACTAGAAAAGATCCCAACAGTGAGAAGCCCAGTGATTTTGTTTACCTTCCGAGAGATGAAGCATTTGGTCACTTGAAGTCATCAGATTTTCTAGCTTATGGAATCAAATCTGTGGCCCAAGATGTCTTGCCTGTGTTGACTGATGCATTCGATGGAAATCTTTTGAGCCTTGAGTTCGATAATTTTGCTGAAGTGCGCAAACTCTATGAAGGTGGAGTTACATTGCCTACAAACTTTCTTAGCAAGATCACTCCTATACCAATAATTAAGGAACTTTTTCGAACTGATGGCGAACAGTTCCTCAAGTATCCACCACCTAAAGTGATGCAGGTCGACAAGTCTGCATGGATGACTGATGAAGAATTTGCAAGAGAAACAATTGCTGGTTTGAATCCAAATGTCATCAAGATTATTGAGGAGTTCCCACTAAGTAGCAAGCTAGATACTCAAGCCTATGGTGATCATACCTGTATAATAACAAAAGAGCATTTGGAGCCTAACTTAGGTGGTCTCACTGTTGAGCAGGCTATCCAAAACAAGAAGTTGTTCATCTTAGATCACCATGACTATCTCATTCCATATTTGAGGAAAATAAATGCAAATACCACAAAGACTTATGCTACAAGAACCATATTTTTCTTGAAAAATGATGGAACTTTGACGCCATTGGCCATTGAGTTAAGTAAGCCACATCCTCAGGGTGAAGCATATGGTCCTGTTAGTGAAGTCTACGTGCCTTCGAGTGAAGGAGTTGAAGCTTACATTTGGTTACTGGCAAAGGCTTACGTTGTTGTGAATGATGCTTGCTACCATCAAATCATTAGCCATTGGCTAAACACTCATGCGGTTGTGGAGCCATTCGTCATAGCGACAAACAGGCATCTGAGCGTGGTTCACCCTATTTACAAACTTCTGTTTCCTCACTATCGTGACACCATGAACATTAATTCACTTGCCCGCAAATCCTTGGTCAATGCCGACGGTATTATAGAGAAAACATTCTTGTGGGGTAGGTACTCTTTGGAAATGTCTGCTGTTATTTACAAGGATTGGGTTTTCACCGATCAAGCATTGCCTAATGATCTTGTCAAGAGAGGAGTTGCTGTTAAGGATCCATCTGCTCCCCATGGAGTTCGACTTTTGATCGAGGACTATCCTTATGCTTCTGATGGGCTAGAGATATGGGATGCTATCAAGTCTTGGGTGGAAGAATATGTCTCATTCTACTACAAGTCAGATGAGGAACTTCAAAAAGACCCCGAGCTCCAAGCTTGGTGGAAAGAACTTGTAGAGGTGGGTCATGGGGATTTGAAGGATAAGCCATGGTGGCAAAAGATGCAAACTCGTGAAGAGTTGGTTGAAGCTTCCGCTACCCTCATATGGATTGCTTCAGCTCTTCATGCTGCTGTTAACTTTGGACAGTATCCATATGGAGGTTTAATCCTGAATAGGCCAACTATTAGCAGGAGATTCATGCCTGAGAAAGGGTCTCCTGAATATGATGCGTTAGCTAAGAACCCTGAGAAGGAGTTTTTGAAGACTATTACTGGCAAGAAAGAGACCCTCATTGACCTTACAATTATAGAAATTTTATCAAGGCACGCATCTGATGAGTTCTACCTTGGGCAGAGAGATGGTGGTGACTACTGGACTTCTGATGCCGGGCCATTAGAGGCCTTTAAGAGGTTTGGAAAGAATCTTGAAGAGATTGAAAAGAAGCTTATAGAGAAGAACAATAATGAGACATTGAGAAACCGCTATGGGCCGGCTAAAATGCCTTACACTTTGCTCTATCCTTCTAGTGAGGAGGGATTGACTTTCAGAGGAATTCCCAACAGTATCTCTATCTAA
Predicted protein sequences of Glyma15g03050
>Glyma15g03050.1   sequence type=predicted peptide   gene model=Glyma15g03050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFPFGHKGQKIKGTMVVMQKNVLDINSITSVDGIVGTGLDFLGSALDTVTFLASSISIQLISATKADGGKGKVGKATNLRGKITLPTIGAKEEAYDAQFDWDSDFGIPGAFYIKNFMQNEFYLKSLILEDIPNHGTIHFICNSWVYNSKHYKTDRIFFANNTYLPSETPAPLVKYREEELKNVRGDGTGERKEWDRIYDYDVYNDLGDPDKGEKYARPVLGGSALPYPRRGRTGRGKTRKDPNSEKPSDFVYLPRDEAFGHLKSSDFLAYGIKSVAQDVLPVLTDAFDGNLLSLEFDNFAEVRKLYEGGVTLPTNFLSKITPIPIIKELFRTDGEQFLKYPPPKVMQVDKSAWMTDEEFARETIAGLNPNVIKIIEEFPLSSKLDTQAYGDHTCIITKEHLEPNLGGLTVEQAIQNKKLFILDHHDYLIPYLRKINANTTKTYATRTIFFLKNDGTLTPLAIELSKPHPQGEAYGPVSEVYVPSSEGVEAYIWLLAKAYVVVNDACYHQIISHWLNTHAVVEPFVIATNRHLSVVHPIYKLLFPHYRDTMNINSLARKSLVNADGIIEKTFLWGRYSLEMSAVIYKDWVFTDQALPNDLVKRGVAVKDPSAPHGVRLLIEDYPYASDGLEIWDAIKSWVEEYVSFYYKSDEELQKDPELQAWWKELVEVGHGDLKDKPWWQKMQTREELVEASATLIWIASALHAAVNFGQYPYGGLILNRPTISRRFMPEKGSPEYDALAKNPEKEFLKTITGKKETLIDLTIIEILSRHASDEFYLGQRDGGDYWTSDAGPLEAFKRFGKNLEEIEKKLIEKNNNETLRNRYGPAKMPYTLLYPSSEEGLTFRGIPNSISI*






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