Glyma15g03000 - SoyBase

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma15g03000

Feature Type:	gene_model
Chromosome:	Gm15
Start:	2098364
stop:	2103953
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g03000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G72710	AT	Annotation by Michelle Graham. TAIR10: casein kinase 1-like protein 2 \| chr1:27372553-27376178 FORWARD LENGTH=465	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0006487	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation	SoyBase	N/A	ISS
GO:0042546	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis	SoyBase	N/A	ISS
GO:0044036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1163	KOG	Casein kinase (serine/threonine/tyrosine protein kinase)	JGI		ISS
PTHR11909	Panther	CASEIN KINASE-RELATED	JGI		ISS
PTHR11909:SF18	Panther	CASEIN KINASE	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_G7IS36	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Casein kinase I isoform delta-like protein n=1 Tax=Medicago truncatula RepID=G7IS36_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MD15	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MD15_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g03000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g03000

Paralog	Evidence	Comments
Glyma13g42380	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g03000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g025900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g03000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g03000

Limit To All Plant Sequences

>Glyma15g03000.3   sequence type=transcript   gene model=Glyma15g03000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTAAAAACAAAAATCCTATCCATATCCAATTAACTCAAATATTATCTATCAAAATCAGAACGGATTCAGAATACCCACTTATATGAGTTATTTTTGTCTAAACTATGGTTCAATTGCAGGCTTGCTTGCTGCACGCTACTGAAAAAGAAAGAAAGAAAATCCGTTTGGATGAATGCGCGAGAGGAATCAACCCAATCAAGAGAAACTCTCTCTCCCTTCTACACTTTTAAGAAGAAAAAGGTTTAATTCCCCACTCATCGAATGGAACCTCGGGTTGCCAACAAGTTCCGTCTTGGCCGCAAGATTGGTAGCGGATCCTTCGGCGAGATCTATCTCGGTACGAATACCCAGACAAATGAAGAGGTTGCAATTAAGCTCGAAAATGTCAAAACCAAGCATCCTCAATTGTTGTACGAATCAAAGTTGTATAAAATACTGCAAGGAGGAACTGGGATCCCAAATGTGAGATGGTTTGGCATTGAAGGAGATTACAATGTCCTTGTGATGGATTTACTGGGACCTAGTCTTGAGGATTTATTCAATTTCTGTACCCGGAAATTGTCTCTCAAAACTGTTCTCATGCTTGCTGATCAGATGATAAATCGAGTTGAGTTTATTCATTCCAAATCATTTTTACATAGGGACATCAAGCCAGACAACTTCCTAATGGGTTTGGGGAGGCGTGCAAATCAAGTTTATGCCATTGACTTTGGTCTTGCTAAGAAGTACAGAGACACCTCTACCCATCAACATATTCCTTACAGAGAGAATAAGAATTTGACTGGAACTGCTAGATATGCTAGTATGAATACTCATCTTGGAATTGAGCAAAGCCGTAGGGACGACTTAGAATCACTTGGATTTGTTCTTATGTATTTTTTGAGAGGAAGTCTCCCGTGGCAGGGATTGAAAGCAGGTACTAAGAAGCAGAAGTATGAGAAAATCAGTGAGAAGAAAGTTTCTACTTCTATCGAGTCTCTGTGCCGTGGCTACCCCTCAGAGTTCGCTTCATACTTCCATTACTGTCGGTCACTGCGATTTGATGATAAACCAGATTATGCTTATCTGAAAAGGCTTTTCCGTGACCTTTTCATTCGTGAAGGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAATCTCAAATTGCCACACCTGTTCGTGTTATTGTTCCTGCTGCTGGACAAAGTTCTGGGCTGCCACCAGCTGTTGTAAATGCTGATAGACAGACAGGTGGGGTGAACAGTAGGCATACTGGTTGGTCTTCATCTGATCCTGCTCGAAGAAGAAACTCTGGACCTATTGCAAATGATGGAATGTCGTCAAGACAAAAAGCCCCAGTTCCAAGTGATTCAACTGGATCTAAAGATGTTATGTTGTCTAGTTCTAATTTCCGGTCAAGTGGATCCACAAGGCGAGGTGCTGTATCGAGCAGTCGTGATGCAGCTGTTGGCAATGAGACTGAGCCCTCTCATCCTCTCACCATGGATGCTAGTCCAGGAGCACTCCGTAAAATCTCCAATGCTCAAAGAAGTTCACCTATCATGTCATTTGAGCACAACAGAACATCCTCTGGAAGAAACACATCAAACATGAAGAATTACGAGTCAACTCTCCGGGGTATTGAGACCCTAAATTTCAATGACGAGAGGTTACAGTATTAGCAGCTTCCATTCTCGACCATATCTATCTTAGTGTGTTGTGTTGTCTGTGCATTTTGTTGGAGGAAAGCTGCAACAAGATGGTAATTGTCACTATAAAGTATACAAGAAAGATATGCTCAAGTGGTCTCCTGACAAATCTGGCCTTGAAAAGGCTTTTGTTAATACAGTTGACCGTGTTGGTTCTACATCTACCATCGTTCCCTCTTTTATATTATTTAGTGAAGTCTCATGCTTTCTTGGCTCTTTCTTTTATGGATATATATATATCATATATCATGTTTGTTGAAATTTCATCAGCCACCAACTGGTAAAACGACCACTGCTACAATACTACAAATTTCAGGGGCTCTTTCACGTGCAAAGAAGGAACTACAAATTCGTAAGCAAGATGTGAACTGCGTTGGTTTTTATAAATTATAAACATTTTAAGTGTCAAGTGTCTTGTATGGCAGTGGAATTCCGAGTTTTATTTGAAAAAGAACTGGTTGTCATATCCGTTATTAACATGAAAGGATAAAAATGTCTTACAATAACACA

Coding sequences of Glyma15g03000

Limit To All Plant Sequences

>Glyma15g03000.2   sequence type=CDS   gene model=Glyma15g03000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACCTCGGGTTGCCAACAAGTTCCGTCTTGGCCGCAAGATTGGTAGCGGATCCTTCGGCGAGATCTATCTCGGTACGAATACCCAGACAAATGAAGAGGTTGCAATTAAGCTCGAAAATGTCAAAACCAAGCATCCTCAATTGTTGTACGAATCAAAGTTGTATAAAATACTGCAAGGAGGAACTGGGATCCCAAATGTGAGATGGTTTGGCATTGAAGGAGATTACAATGTCCTTGTGATGGATTTACTGGGACCTAGTCTTGAGGATTTATTCAATTTCTGTACCCGGAAATTGTCTCTCAAAACTGTTCTCATGCTTGCTGATCAGATGATAAATCGAGTTGAGTTTATTCATTCCAAATCATTTTTACATAGGGACATCAAGCCAGACAACTTCCTAATGGGTTTGGGGAGGCGTGCAAATCAAGTTTATGCCATTGACTTTGGTCTTGCTAAGAAGTACAGAGACACCTCTACCCATCAACATATTCCTTACAGAGAGAATAAGAATTTGACTGGAACTGCTAGATATGCTAGTATGAATACTCATCTTGGAATTGAGCAAAGCCGTAGGGACGACTTAGAATCACTTGGATTTGTTCTTATGTATTTTTTGAGAGGAAGTCTCCCGTGGCAGGGATTGAAAGCAGGTACTAAGAAGCAGAAGTATGAGAAAATCAGTGAGAAGAAAGTTTCTACTTCTATCGAGTCTCTGTGCCGTGGCTACCCCTCAGAGTTCGCTTCATACTTCCATTACTGTCGGTCACTGCGATTTGATGATAAACCAGATTATGCTTATCTGAAAAGGCTTTTCCGTGACCTTTTCATTCGTGAAGGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAATCTCAAATTGCCACACCTGTTCGTGTTATTGTTCCTGCTGCTGGACAAAGTTCTGGGCTGCCACCAGCTGTTGTAAATGCTGATAGACAGACAGGTGGGGTGAACAGTAGGCATACTGGTTGGTCTTCATCTGATCCTGCTCGAAGAAGAAACTCTGGACCTATTGCAAATGATGGAATGTCGTCAAGACAAAAAGCCCCAGTTCCAAGTGATTCAACTGGATCTAAAGATGTTATGTTGTCTAGTTCTAATTTCCGGTCAAGTGGATCCACAAGGCGAGGTGCTGTATCGAGCAGTCGTGATGCAGCTGTTGGCAATGAGACTGAGCCCTCTCATCCTCTCACCATGGATGCTAGTCCAGGAGCACTCCGTAAAATCTCCAATGCTCAAAGAAGTTCACCTATCATGTCATTTGAGCACAACAGAACATCCTCTGGAAGAAACACATCAAACATGAAGAATTACGAGTCAACTCTCCGGGGTATTGAGACCCTAAATTTCAATGACGAGAGGTTACAGTATTAG

>Glyma15g03000.3   sequence type=CDS   gene model=Glyma15g03000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACCTCGGGTTGCCAACAAGTTCCGTCTTGGCCGCAAGATTGGTAGCGGATCCTTCGGCGAGATCTATCTCGGTACGAATACCCAGACAAATGAAGAGGTTGCAATTAAGCTCGAAAATGTCAAAACCAAGCATCCTCAATTGTTGTACGAATCAAAGTTGTATAAAATACTGCAAGGAGGAACTGGGATCCCAAATGTGAGATGGTTTGGCATTGAAGGAGATTACAATGTCCTTGTGATGGATTTACTGGGACCTAGTCTTGAGGATTTATTCAATTTCTGTACCCGGAAATTGTCTCTCAAAACTGTTCTCATGCTTGCTGATCAGATGATAAATCGAGTTGAGTTTATTCATTCCAAATCATTTTTACATAGGGACATCAAGCCAGACAACTTCCTAATGGGTTTGGGGAGGCGTGCAAATCAAGTTTATGCCATTGACTTTGGTCTTGCTAAGAAGTACAGAGACACCTCTACCCATCAACATATTCCTTACAGAGAGAATAAGAATTTGACTGGAACTGCTAGATATGCTAGTATGAATACTCATCTTGGAATTGAGCAAAGCCGTAGGGACGACTTAGAATCACTTGGATTTGTTCTTATGTATTTTTTGAGAGGAAGTCTCCCGTGGCAGGGATTGAAAGCAGGTACTAAGAAGCAGAAGTATGAGAAAATCAGTGAGAAGAAAGTTTCTACTTCTATCGAGTCTCTGTGCCGTGGCTACCCCTCAGAGTTCGCTTCATACTTCCATTACTGTCGGTCACTGCGATTTGATGATAAACCAGATTATGCTTATCTGAAAAGGCTTTTCCGTGACCTTTTCATTCGTGAAGGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAATCTCAAATTGCCACACCTGTTCGTGTTATTGTTCCTGCTGCTGGACAAAGTTCTGGGCTGCCACCAGCTGTTGTAAATGCTGATAGACAGACAGGTGGGGTGAACAGTAGGCATACTGGTTGGTCTTCATCTGATCCTGCTCGAAGAAGAAACTCTGGACCTATTGCAAATGATGGAATGTCGTCAAGACAAAAAGCCCCAGTTCCAAGTGATTCAACTGGATCTAAAGATGTTATGTTGTCTAGTTCTAATTTCCGGTCAAGTGGATCCACAAGGCGAGGTGCTGTATCGAGCAGTCGTGATGCAGCTGTTGGCAATGAGACTGAGCCCTCTCATCCTCTCACCATGGATGCTAGTCCAGGAGCACTCCGTAAAATCTCCAATGCTCAAAGAAGTTCACCTATCATGTCATTTGAGCACAACAGAACATCCTCTGGAAGAAACACATCAAACATGAAGAATTACGAGTCAACTCTCCGGGGTATTGAGACCCTAAATTTCAATGACGAGAGGTTACAGTATTAG

Predicted protein sequences of Glyma15g03000

Limit To All Plant Sequences

>Glyma15g03000.2   sequence type=predicted peptide   gene model=Glyma15g03000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEPRVANKFRLGRKIGSGSFGEIYLGTNTQTNEEVAIKLENVKTKHPQLLYESKLYKILQGGTGIPNVRWFGIEGDYNVLVMDLLGPSLEDLFNFCTRKLSLKTVLMLADQMINRVEFIHSKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGFVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQIATPVRVIVPAAGQSSGLPPAVVNADRQTGGVNSRHTGWSSSDPARRRNSGPIANDGMSSRQKAPVPSDSTGSKDVMLSSSNFRSSGSTRRGAVSSSRDAAVGNETEPSHPLTMDASPGALRKISNAQRSSPIMSFEHNRTSSGRNTSNMKNYESTLRGIETLNFNDERLQY*

>Glyma15g03000.3   sequence type=predicted peptide   gene model=Glyma15g03000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEPRVANKFRLGRKIGSGSFGEIYLGTNTQTNEEVAIKLENVKTKHPQLLYESKLYKILQGGTGIPNVRWFGIEGDYNVLVMDLLGPSLEDLFNFCTRKLSLKTVLMLADQMINRVEFIHSKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGFVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQIATPVRVIVPAAGQSSGLPPAVVNADRQTGGVNSRHTGWSSSDPARRRNSGPIANDGMSSRQKAPVPSDSTGSKDVMLSSSNFRSSGSTRRGAVSSSRDAAVGNETEPSHPLTMDASPGALRKISNAQRSSPIMSFEHNRTSSGRNTSNMKNYESTLRGIETLNFNDERLQY*

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