Glyma15g02990 - SoyBase

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Report for Sequence Feature Glyma15g02990

Feature Type:	gene_model
Chromosome:	Gm15
Start:	2089091
stop:	2095994
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g02990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G17500	AT	Annotation by Michelle Graham. TAIR10: ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein \| chr1:6018757-6023201 FORWARD LENGTH=1216	SoyBase	E_val: 0	ISS
GO:0006812	GO-bp	Annotation by Michelle Graham. GO Biological Process: cation transport	SoyBase	N/A	ISS
GO:0006888	GO-bp	Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009749	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus	SoyBase	N/A	ISS
GO:0009750	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus	SoyBase	N/A	ISS
GO:0015914	GO-bp	Annotation by Michelle Graham. GO Biological Process: phospholipid transport	SoyBase	N/A	ISS
GO:0043090	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid import	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0000287	GO-mf	Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004012	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phospholipid-translocating ATPase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0015662	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
KOG0206	KOG	P-type ATPase	JGI		ISS
PTHR24092	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24092:SF18	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00122	PFAM	E1-E2 ATPase	JGI		ISS
PF00702	PFAM	haloacid dehalogenase-like hydrolase	JGI		ISS
UniRef100_G7IS39	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aminophospholipid ATPase n=1 Tax=Medicago truncatula RepID=G7IS39_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MD14	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MD14_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g02990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g02990

Paralog	Evidence	Comments
Glyma13g42390	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g02990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g025800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g02990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g02990

Limit To All Plant Sequences

>Glyma15g02990.1   sequence type=CDS   gene model=Glyma15g02990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACGGGGGAGGATCAGAGCAAGGATCCGAAGGAGCCATCTTTACACATTTGGTGGTTGCCTGAGGCCAACTACCACTGAGGAGGTGCCTCATCCCCTTCAAGGTCCGGGATACTCGCGAACAGTATACTGCAACCAGCCTCAACTCCTTGAAAAGAATTCTCTATTTTACTGCAAGAATGATGTATCAACCACCAAATACAATGTCATCACGTTTTTCCCTAAGGCACTGTTTGAGCAATTTCGAAGGGTTGCTAATATATACTTCCTTTTGGCTGCTTGCCTTTCGGCGTCTCCAATTTCACCTTTCAGCCCACTAAGCATGATTGCTCCTTTGGCGTTTGTTGTGGGGCTGAGTATGGCAAAGGAGGCATTGGAGGATTCGCGCAGGTTCTTTCAGGATGTCAAAGTTAATCGCCGGAAAGCTAGTCTCCATAAAGGCAATGGCATTTTTGGTCTCAGGTCGTGGCAGAAGATTATGGTTGGGGATGTGGTAAAAGTAGAAAAGGACCAATTTTTTCCAGCTGACTTGCTTCTCTTGGCGTCAAGTTATGAAGATGGGATATGCTATGTGGAGACAATGAATTTAGATGGGGAGACAAACTTGAAGGTGAAGAGATCTTTGGAGGCTACCTTGTCTCTGGATAATGATGGGGCTTTTAAGGATTTCTCTGGAACAATACGTTGTGAAGATCCCAATCCTGATCTTTACACTTTTGTTGGGAACTTTGAGTATGAACATCAAGTTTATCCTCTTGATCCTGGCCAAATTCTTCTCCGTGATTCAAAGCTTAGGAACACTGATCATGTCTATGGAGTGGTCATTTTCACTGGACATGACAGCAAAGTCATGCAGAATTCTACCAAATCCCCTTCAAAAAGAAGCACAATAGAAAAAAAGATGGATTATATCATATACACTCTTTTCACTGTCCTTATATCGATATCTTTTATTAGTTCAATAGGATTTGTTGCAAAGACCAAATACCAAACCCCAAAGTGGTGGTATTTACGGCCTGACAATATTGAATACCAGTTTGATCCTGGTAAACTTGGATTGGCTGGGATGAGCCATCTGATCACTGCACTCATTCTTTATGGATATTTGATACCCATCTCGCTTTATGTTTCAATTGAGTTTGTGAAGGTATTACAGGCAACCTTCATTAACCAAGACATTCAAATGTATGATGATGAATCTGGGACTCCAGCTGAAGCACGAACATCAAATTTGAATGAAGAGTTGGGTCAGGTAGACACTATCCTATCTGATAAAACTGGCACTTTAACCTGCAACCAGATGGACTTTTTGAAGTGCTCCATTGCTGGTACTGCATATGGTGTTTGTTCCAGTGAAGTTGAACTTGCTGCAGCAAAGCAGATGGCTTCTGATCTTGAGGAGCAGGAATTGGATCTCTCTAATTTCCCCATGCGTAAGGAGAGTAACGTGCAATGGGAAAATATCACAGAAGATGAAGAAACTGAACTGGGGACTGTTGTTACTTCCAGGGATGATGGAGCTCGTAGGCCTGCCATAAAGGGATTTGGTTTTGAAGATGACCGCCTTATGAATGGTAATTGGTTGAAAGAACCCAATGCCGATGTCCTTTTGCTGTTTTTCCGGATATTAGCAGTTTGCCATACAGCCATTCCTGAACTGAATGAGGAGACTGACAGTTGTACATATGAAGCCGAATCACCTGATGAAGGGGCTTTTCTAGTAGCAGCAAGAGAATTTGGTTTTGAATTTTATAGGAGAACTCAATCAAGTGTTGTCCTTCGTGAAAGATTTTTTGCTTTGGGTCAAGTGGTTCAAAGAGAATATAAAATTTTGAATCTGCTGGACTTTACTAGCAAAAGAAAGCGCATGTCAGTCATTGTGCGTGATGAGGAGGGAAACATCATTCTTTTCTGCAAAGGAGCTGACAGTATCATATTTGATCGACTGTCTAAGAATGGAAAAATGTGTTTGGAGGCTACTACTAGACATTTGAATGAATATGGAGAAGCTGGTTTGAGAACGCTAGCCCTGGCTTACAGAAAGCTTGATGACCAAGAGTACTCTGATTGGAACAACGAGTTTCAGAAGGCCAAGACAGCTGTTGGGTCTGAGAGAGAGGCAATGCTTGAGCAGGTTTCAGATATTATGGAAAGAGAGTTGATTCTTGTTGGGGCTACTGCAGTGGAAGATAAACTACAGAAAGGGGTGCCTCAATGCATTGATAAACTTGCTCAAGCTGGTCTAAAGATCTGGGTATTGACTGGGGATAAGATGGAAACAGCAATCAACATTGGATTCGCTTGTAGTTTACTTCGACAGGGCATGAAGCAAATCTGTATCACAATGAATTCAGATTCTGTAACTAATGATGGGAAAGAGGTCATCAAAGGCAACATCTTGAGTCAAATCACCAATGCTTCACAAATGATAAAGCTGGAAAAGGATCCACATGCTGCATTTGCATTAATTATTGATGGGAAAACTCTAACATATGCTTTAGAAGATGATGTCAAGCACCAATTTTTGGGATTGGCTGTTGGTTGTGCATCTGTTATTTGCTGTCGTGTGTCTCCAAAGCAAAAAGCATTGGTAACAAGGTTAGTGAAAGAAGGAACTGGGAAAACCACTTTAGCCATAGGTGATGGTGCAAATGATGTTGGCATGATTCAAGAAGCTGACATTGGTGTTGGAATCAGTGGGGTTGAAGGTATGCAGGCAGTAATGGCTAGTGACTTTGCTATTGCCCAATTCCGGTTTTTGGAGCGGCTTCTGGTTGTCCATGGACACTGGTGCTACAAGAGAATTGCACAAATGATCTGTTATTTCTTCTACAAAAATATAGCATTTGGCCTCACAATATTATATTTTGAGGCCTTTGCGGGCTTCTCTGGACAATCGGTTTATGATGACTGGTACATGATATTGTTCAATGTTTTTCTTACATCATTGCCTGTCATTTCTCTTGGAGTTTTTGAACAAGATGTTCCATCAGAAGTTTGCTTACAGTTTCCTGCATTGTATCAGCAAGGACCCAAAAATTTGTTCTTTGACTGGTATAGAATCTTGGGATGGATGGGGAATGGTCTTTATTCCTCCCTTGTCATCTTCTTCCTTGTGATAATAATCTTCTATGACCAAGCATTCTGTGTGAATGGCCAGATCGCAGACATGGCTGCTGTTGGTACCATGATGTTCACCTGTATAATCTGGGCTGTCAATTGCCAGATTGCACTGACAATGAGCCATTTCACATGGATTCAACACCTCGTTGTGTGGGGCAGCATAACCACTTGGTACATCTTTCTGTTGTTGTATGGCATGCTTCCACCACAATATTCCAAGTCTGCCTACCAACTATTGATTGAGGTTCTTGCTCCTGCTCCTATTTATTGGACAGCAACCCTATTAGTAACAATCGCATGCGTTCTTCCTTATCTTGCCCACATATCCTTCCAAAGATGTTTTAATCCCATGGATCATCACATTATCCAAGAAATCAAGTACTACAAGAAGGACATTGAAGATCAACACATGTGGACCAGGGAGCGGTCTAAAGCAAGGCAGGTAACTAAGATTGGATTCACGGCAAGAGTGGAAGCAAAGATTAGGCATTTTAAAGGCAAGCTGCAGAAGAAGCAACAGTCTTCACTGGGGGCTTTGTCCCCATCATGA

Predicted protein sequences of Glyma15g02990

Limit To All Plant Sequences

>Glyma15g02990.1   sequence type=predicted peptide   gene model=Glyma15g02990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARGRIRARIRRSHLYTFGGCLRPTTTEEVPHPLQGPGYSRTVYCNQPQLLEKNSLFYCKNDVSTTKYNVITFFPKALFEQFRRVANIYFLLAACLSASPISPFSPLSMIAPLAFVVGLSMAKEALEDSRRFFQDVKVNRRKASLHKGNGIFGLRSWQKIMVGDVVKVEKDQFFPADLLLLASSYEDGICYVETMNLDGETNLKVKRSLEATLSLDNDGAFKDFSGTIRCEDPNPDLYTFVGNFEYEHQVYPLDPGQILLRDSKLRNTDHVYGVVIFTGHDSKVMQNSTKSPSKRSTIEKKMDYIIYTLFTVLISISFISSIGFVAKTKYQTPKWWYLRPDNIEYQFDPGKLGLAGMSHLITALILYGYLIPISLYVSIEFVKVLQATFINQDIQMYDDESGTPAEARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTAYGVCSSEVELAAAKQMASDLEEQELDLSNFPMRKESNVQWENITEDEETELGTVVTSRDDGARRPAIKGFGFEDDRLMNGNWLKEPNADVLLLFFRILAVCHTAIPELNEETDSCTYEAESPDEGAFLVAAREFGFEFYRRTQSSVVLRERFFALGQVVQREYKILNLLDFTSKRKRMSVIVRDEEGNIILFCKGADSIIFDRLSKNGKMCLEATTRHLNEYGEAGLRTLALAYRKLDDQEYSDWNNEFQKAKTAVGSEREAMLEQVSDIMERELILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINIGFACSLLRQGMKQICITMNSDSVTNDGKEVIKGNILSQITNASQMIKLEKDPHAAFALIIDGKTLTYALEDDVKHQFLGLAVGCASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFAIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTILYFEAFAGFSGQSVYDDWYMILFNVFLTSLPVISLGVFEQDVPSEVCLQFPALYQQGPKNLFFDWYRILGWMGNGLYSSLVIFFLVIIIFYDQAFCVNGQIADMAAVGTMMFTCIIWAVNCQIALTMSHFTWIQHLVVWGSITTWYIFLLLYGMLPPQYSKSAYQLLIEVLAPAPIYWTATLLVTIACVLPYLAHISFQRCFNPMDHHIIQEIKYYKKDIEDQHMWTRERSKARQVTKIGFTARVEAKIRHFKGKLQKKQQSSLGALSPS*

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