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Report for Sequence Feature Glyma15g02955

Feature Type:gene_model
Chromosome:Gm15
Start:2064914
stop:2067075
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g02955
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G13890AT Annotation by Michelle Graham. TAIR10: myb domain protein 26 | chr3:4576744-4578027 REVERSE LENGTH=358 SoyBaseE_val: 1.00E-78ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009739GO-bp Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus SoyBaseN/AISS
GO:0009834GO-bp Annotation by Michelle Graham. GO Biological Process: secondary cell wall biogenesis SoyBaseN/AISS
GO:0009901GO-bp Annotation by Michelle Graham. GO Biological Process: anther dehiscence SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
KOG0048 KOG Transcription factor, Myb superfamily JGI ISS
PTHR10641Panther MYB-RELATED JGI ISS
PF00249PFAM Myb-like DNA-binding domain JGI ISS
UniRef100_G7IS44UniRef Annotation by Michelle Graham. Most informative UniRef hit: R2R3-MYB transcription factor n=1 Tax=Medicago truncatula RepID=G7IS44_MEDTR SoyBaseE_val: 1.00E-134ISS
UniRef100_UPI000233B099UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233B099 related cluster n=1 Tax=unknown RepID=UPI000233B099 SoyBaseE_val: 0ISS

Expression Patterns of Glyma15g02955
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g02955 not represented in the dataset
Glyma15g02955 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g02955
ParalogEvidenceComments
Glyma13g42431 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g02955 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g025500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g02955
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g02955
>Glyma15g02955.1   sequence type=CDS   gene model=Glyma15g02955   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGCATCACTCTTGCTGCAACAAGCAGAAGGTCAAAAGAGGGCTATGGTCACCTGAAGAAGATGAAAAGCTCATAAACTATATCACAACTTATGGACATGGTTGCTGGAGCTCAGTCCCAAAACTTGCAGGCCTGCAGAGGTGTGGAAAGAGTTGCAGATTAAGATGGATAAACTATCTAAGACCTGATTTGAAACGGGGAAGCTTCTCTCCTCAAGAAGCAGCACTCATTATAGAACTTCATAGTATTCTAGGAAACAGGTGGGCTCAGATAGCCAAGCACCTACCTGGAAGAACAGATAATGAGGTGAAGAACTTTTGGAATTCAAACATAAAGAAGAAACTGCTTTCTCATGATGTTGTTCCTTCTTTAGCCACATTTTCTGATATTCACGGTCCTCCCAATAGTTCCATGGAAAGTTTCTTCCCTTTAACTGACAACCCTATCCTTAACTCCCATCATCACTTAGACCAGCTATTCCTTCCCATCATCCCATCCCCAATCCTACAAGCCTTTGATCATCATCACCATAATAATGATATCAAACATATTGACATAAACAATTTTAATAATAATAATGCCAATTTCCTACATTTTCAGAATCCAATGCCAGAAACAGTGCCTCCAATATCCAACAATATTCCATCTTTGTATCAAGAAGATACATGGTCTTCATTGGGGTGTGTACCTATTCATCTTAATCCAAATCAAGAAAATCAAATCATGATCACCAAAAGTGATCATACTACCCCACACTTGATTGTTGACAAATTCGTCAATCCAAGTACATGGCAGCAGCAGCACTCTGTGGAAGTGGAACCCCCCATTGTACCAAAAGTGTGTGAGAGCATTGAGGATTATGTCTGTAGCATTCCATATTCTTCTTCTGCTAATTCACATGAGGAAGCTGTTGCGTGTTACACACCTGCAGTTATTTGTCCACAAGATCAAACTGCAGCACCGAATCAAGTGGAGTACATTGATGCTCTCATCATGTCATCGTTGCCATCCACAACAACATCGTCTTCATCAGTATCATTCTTCCAAGCAAACAAATAG
Predicted protein sequences of Glyma15g02955
>Glyma15g02955.1   sequence type=predicted peptide   gene model=Glyma15g02955   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGHHSCCNKQKVKRGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSNIKKKLLSHDVVPSLATFSDIHGPPNSSMESFFPLTDNPILNSHHHLDQLFLPIIPSPILQAFDHHHHNNDIKHIDINNFNNNNANFLHFQNPMPETVPPISNNIPSLYQEDTWSSLGCVPIHLNPNQENQIMITKSDHTTPHLIVDKFVNPSTWQQQHSVEVEPPIVPKVCESIEDYVCSIPYSSSANSHEEAVACYTPAVICPQDQTAAPNQVEYIDALIMSSLPSTTTSSSSVSFFQANK*






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