Glyma15g02940 - SoyBase

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Report for Sequence Feature Glyma15g02940

Feature Type:	gene_model
Chromosome:	Gm15
Start:	2051157
stop:	2053854
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g02940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G72670	AT	Annotation by Michelle Graham. TAIR10: IQ-domain 8 \| chr1:27356898-27358657 REVERSE LENGTH=414	SoyBase	E_val: 3.00E-91	ISS
GO:0000226	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization	SoyBase	N/A	ISS
GO:0000911	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
PTHR10699	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR10699:SF9	Panther	CALMODULIN BINDING	JGI		ISS
PF00612	PFAM	IQ calmodulin-binding motif	JGI		ISS
UniRef100_G7IS48	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: IQ domain-containing protein n=1 Tax=Medicago truncatula RepID=G7IS48_MEDTR	SoyBase	E_val: 2.00E-150	ISS
UniRef100_UPI000233B8C1	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B8C1 related cluster n=1 Tax=unknown RepID=UPI000233B8C1	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g02940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g02940

Paralog	Evidence	Comments
Glyma13g42440	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g02940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g025400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g02940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g02940

Limit To All Plant Sequences

>Glyma15g02940.2   sequence type=CDS   gene model=Glyma15g02940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGCTTCGGGAAGGTGGTTTAAGTCACTTCTTCCTTTTAGAAAGACCTCAACCTCAACAACTGATCAAGATAAGGGTGGTGACAACAAGAGTAAGAAGAAGTGGAAGCTATGGAGGGCTTCTTCAGAAGGGTCCATGAAGAAAGTTGGTGGTGGTGGTGGTGGTGCTGCTGCTGCATCTGATTCTTCCCTTACTTATGCGGTGGCCGTGATGGTTCCCAAAGATTTCAAGCTCATCAAGCAGGAATGGGCTGCCATTCGCATTCAGGCTGTGTTTCGAGCCTTCTTGGCTAGACGAGCTTTGAGGGCTTTGAGGGCAGTGGTAAGGCTACAAGCTATTTTTAGAGGCCGGCTAGTCAGGAAGCAAGCAGCTGTTACTCTAAGATGCATGCAGGCTCTTGTTCGAGTTCAGGCGCGAGTGAGGGCAAGGAATGTGAGGAATTCTCCAGAAGGGAAAGCTGTGCAGAAATTACTTGATGAGCATCGCAACCAAGCTGATCCTTTTAATCAAATTGAGCAAGGATGGTGTGATATTCCTGGAACTGTGGATGAAGTTAAAGCAAAGCTACAAATGAGGCAAGAAGGAGCCATCAAGAGGGATAGAGCAATGGCATACTCTCTCTCCACACAGTCAAGACTGTGTGCTAGTCCAAACCCAAAAGCCACTAAGGCAATGACTCCTCTCAAGAATAACAACCTAAGCAATAAGAGCTTAGGATATAGCTTGTTGGAACGCTGGATGGAAGCCAAGCCATGGGAGAGTCCAATCTCAAGGAAGAGTGAAGGCCTTGTTCCTGCTTTTCAATCAAGAAGGAATGGTATGACAACTAGGGTTTCTGTTAAGCCTATTATAACCAGTCAATCCACTTCATCATCTTCGGCCATAAGCTCTGCTGAGTACATGTGTGATGATAATAGCCCTGTGTCAACATCTTATACATCTGGATCTCCATCTTTGCCATCCACCCACACTGCTTTGGTGGAAGCAACAGAGGAAAGAGATGCTCATCAACCAAGCTACATGAGTCTGACAGAATCAACTAAGGCTAAACTGAGAGCTTGCAGGAGTTCTTCACAGAATTCAAAGAGACTTGTTATGGAGGACAGTGTGTCTCACAGCACAACAACAGGCCTTATGAATGGAGATACTAGAAGCTGTTCTGATTCTGATCCTTCAGTTAACTTGTGGAAGGATTCTTGTGCAACAACTCTAAGGGCAAGTTATCAAAAACGACAAATTAGGATATGA

Predicted protein sequences of Glyma15g02940

Limit To All Plant Sequences

>Glyma15g02940.2   sequence type=predicted peptide   gene model=Glyma15g02940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGASGRWFKSLLPFRKTSTSTTDQDKGGDNKSKKKWKLWRASSEGSMKKVGGGGGGAAAASDSSLTYAVAVMVPKDFKLIKQEWAAIRIQAVFRAFLARRALRALRAVVRLQAIFRGRLVRKQAAVTLRCMQALVRVQARVRARNVRNSPEGKAVQKLLDEHRNQADPFNQIEQGWCDIPGTVDEVKAKLQMRQEGAIKRDRAMAYSLSTQSRLCASPNPKATKAMTPLKNNNLSNKSLGYSLLERWMEAKPWESPISRKSEGLVPAFQSRRNGMTTRVSVKPIITSQSTSSSSAISSAEYMCDDNSPVSTSYTSGSPSLPSTHTALVEATEERDAHQPSYMSLTESTKAKLRACRSSSQNSKRLVMEDSVSHSTTTGLMNGDTRSCSDSDPSVNLWKDSCATTLRASYQKRQIRI*

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