Glyma15g02921 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma15g02921

Feature Type:	gene_model
Chromosome:	Gm15
Start:	2038655
stop:	2040979
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g02921

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G13898	AT	Annotation by Michelle Graham. TAIR10: unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1). \| chr3:4584011-4584334 FORWARD LENGTH=107	SoyBase	E_val: 2.00E-16	ISS
UniRef100_I1MD06	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MD06_SOYBN	SoyBase	E_val: 8.00E-89	ISS
UniRef100_Q2HVD2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: EPIDERMAL PATTERNING FACTOR-like protein n=1 Tax=Medicago truncatula RepID=Q2HVD2_MEDTR	SoyBase	E_val: 6.00E-44	ISS

Expression Patterns of Glyma15g02921

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g02921 not represented in the dataset	Glyma15g02921 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g02921

Paralog	Evidence	Comments
Glyma13g42460	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g02921 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g025200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g02921

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g02921

Limit To All Plant Sequences

>Glyma15g02921.2   sequence type=transcript   gene model=Glyma15g02921   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAGACATTGCAACCAAGTTCAAGTCTATGAAATTAGCTAGCCAAAATATCAGAATATTAATCTCAAGTTAAATTAAATCGAGCTCATAAACATGTATAGCTTGGACCATGTAGTAAATATTTGAGTCTTGAGTAACTAGAATCTGTTAGTATGTGGTAAAATAAGCAGCAGAAGATGAGGGACGACGCTCAAATTTAATGCCATGTAAACGGATGGTCCAGATTTTGGATATAGGTGAAGAGATTTTGTCTGTTTCCCAACAACCAACAAAGAAAAGTTGACCCTAGTATCCACACGTTAATCTATTTATGATTTTTTTAGTACCACTTAATTATAGCCTTAAGTTTTTCACAATGATTCCCAGATGTAACTGCCACCCTGCCATTGATTTCTTTCTTCCGTATATGGCAACGAAATCAAAGCATCACTAAAAGACAAAGGTGTTTGAGGCCCAAAATGGGTGCTGTTATTCTGCACTTGTGGATCACCGTATATAGTGTCTTACCCTTAGATTGATTTGAGAGAGAGAAAGGCTCTTTGGCTTGTATTGAAAGGTAAGCAATTGAAGGTTAGAGGCCGAAAGAGAGTGGAATAACAGACTAGTCTTAGGAACTCCCTAGTGAAGGTGAAACTTGCTCTAAGTGAAGCAAAATCACTTGCTTGTGAAGAAGCTCACAAAATCTCTTGCAAGTTAAGTTTGTAGGCTCTGACCTTGTTTTTGGGAATTGCAAGCTAAGCTGGTTTAGTTAGTAGCTAGCCTTTCTCGCCCTTCTTATATATATTCCACAATTCAACAATCAATCATCATGCCTAATTGCCTCTTGTTGTGAAGGGAGAAAGAAGATTCTCATCATCATCACATTCATCATTTTAGGTTTTGAAAAACAAAAAAAAAAAAATGAAAGCAACATTCTGTTGTTTTATGCTAGCTCTACTAATAGTTAGTTGGGAATCCGTAGTAGTAGTAGTAGCAAGGAGGCCCTTTCCTCCAACTGATGGAATGTCCCATCCAGGCCCCAAAGCGGCACCAGGACCAGGGCCAGTGTCTTCACCATCTAATACTGTAGAGCCAGAAAAGGGTTTAATGGAAGAAGCATACTACTATAGAGGAGTGAGCAAAATAGGGTCAAGTCCACCAAGTTGTGAGCACAAGTGTTATGGTTGCACTCCATGTGAAGCGATTCAAGTGCCGAGCACCAGCAGCAGGCGCAGTCATTTGGGATTGCAGTACACAAATTATGAGCCCGAAAGTTGGAAATGCAAGTGTGGTCCTTCCCTCTACAGCCCGTGAATTAGCACTACTATGTTGTTCTTGACTTGTTCATATATACCCCATTTAATATTAGTTTATATATAATCAATGATCTCCTATGTGTCTCACCTTCATATTTATGGTTCCCTCGTACAAACCTCAATTCAAAGGATTTTATTCTATTATGTCATACTTGTGACTACAATTCGAATGCCAACTTATTT

Coding sequences of Glyma15g02921

Limit To All Plant Sequences

>Glyma15g02921.1   sequence type=CDS   gene model=Glyma15g02921   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGCAACATTCTGTTGTTTTATGCTAGCTCTACTAATAGTTAGTTGGGAATCCGTAGTAGTAGTAGTAGCAAGGAGGCCCTTTCCTCCAACTGATGGAATGTCCCATCCAGGCCCCAAAGCGGCACCAGGACCAGGGCCAGTGTCTTCACCATCTAATACTGTAGAGCCAGAAAAGGGTTTAATGGAAGAAGCATACTACTATAGAGGAGTGAGCAAAATAGGGTCAAGTCCACCAAGTTGTGAGCACAAGTGTTATGGTTGCACTCCATGTGAAGCGATTCAAGTGCCGAGCACCAGCAGCAGGCGCAGTCATTTGGGATTGCAGTACACAAATTATGAGCCCGAAAGTTGGAAATGCAAGTGTGGTCCTTCCCTCTACAGCCCGTGA

>Glyma15g02921.2   sequence type=CDS   gene model=Glyma15g02921   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGCAACATTCTGTTGTTTTATGCTAGCTCTACTAATAGTTAGTTGGGAATCCGTAGTAGTAGTAGTAGCAAGGAGGCCCTTTCCTCCAACTGATGGAATGTCCCATCCAGGCCCCAAAGCGGCACCAGGACCAGGGCCAGTGTCTTCACCATCTAATACTGTAGAGCCAGAAAAGGGTTTAATGGAAGAAGCATACTACTATAGAGGAGTGAGCAAAATAGGGTCAAGTCCACCAAGTTGTGAGCACAAGTGTTATGGTTGCACTCCATGTGAAGCGATTCAAGTGCCGAGCACCAGCAGCAGGCGCAGTCATTTGGGATTGCAGTACACAAATTATGAGCCCGAAAGTTGGAAATGCAAGTGTGGTCCTTCCCTCTACAGCCCGTGA

Predicted protein sequences of Glyma15g02921

Limit To All Plant Sequences

>Glyma15g02921.1   sequence type=predicted peptide   gene model=Glyma15g02921   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKATFCCFMLALLIVSWESVVVVVARRPFPPTDGMSHPGPKAAPGPGPVSSPSNTVEPEKGLMEEAYYYRGVSKIGSSPPSCEHKCYGCTPCEAIQVPSTSSRRSHLGLQYTNYEPESWKCKCGPSLYSP*

>Glyma15g02921.2   sequence type=predicted peptide   gene model=Glyma15g02921   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKATFCCFMLALLIVSWESVVVVVARRPFPPTDGMSHPGPKAAPGPGPVSSPSNTVEPEKGLMEEAYYYRGVSKIGSSPPSCEHKCYGCTPCEAIQVPSTSSRRSHLGLQYTNYEPESWKCKCGPSLYSP*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain