|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT2G36450 | AT | Annotation by Michelle Graham. TAIR10: Integrase-type DNA-binding superfamily protein | chr2:15294303-15294857 REVERSE LENGTH=184 | SoyBase | E_val: 6.00E-57 | ISS |
GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
PF00847 | PFAM | AP2 domain | JGI | ISS | |
UniRef100_B9SRH6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Dehydration-responsive element-binding protein 1B, putative n=1 Tax=Ricinus communis RepID=B9SRH6_RICCO | SoyBase | E_val: 8.00E-69 | ISS |
UniRef100_I1MD04 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MD04_SOYBN | SoyBase | E_val: 2.00E-132 | ISS |
Glyma15g02900 not represented in the dataset |
Glyma15g02900 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.15g025100 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g02900.1 sequence type=CDS gene model=Glyma15g02900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGTTCCAGCAACGGTGCATCAAGCAGCAGAGCCTCCAATGCTAACACAGGGCGCCACCCTGTGTACCGTGGAGTGAGGCGTAGGAGTAGTGGCAAATGGGTTTCTGAAATCCGAGAACCCAAAAAACCTAACAGGATTTGGTTAGGGACATTTGCCACCCCTGAAATGGCTGCTATTGCCTATGACGTGGCAGCGCTTGCTCTTAAGGGTAAGGATGCTGAACTCAACTTCCCTAACTCGGCTTCCTCCCTCCCCGTCCCCGCATCATCCGCTGCTCGCGACATTCAGATGGCTGCGGCTAGCGCCGCAGCCGCTGTCGGAGCTGCGAATGATGCACTTGAAGGAAGCCGAGGAGGGAATGCTTCGGTTTCATTGACGGAAGAGTTTTCAGGGGGAAATTTGAACCACTTTGTGGATGAGGACTTGATCTTTGACATGCCGAATATTCTGGTCAATATGGCTGAAGGAATGCTACTGAGTCCTCCTCGTTTTGATAATTTTGCTGCTACCGACTATGAATACATGGATGAAGATCCTAACCTCTGGGGGTTTCCTAATTACTAG
>Glyma15g02900.1 sequence type=predicted peptide gene model=Glyma15g02900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRSSNGASSSRASNANTGRHPVYRGVRRRSSGKWVSEIREPKKPNRIWLGTFATPEMAAIAYDVAALALKGKDAELNFPNSASSLPVPASSAARDIQMAAASAAAAVGAANDALEGSRGGNASVSLTEEFSGGNLNHFVDEDLIFDMPNILVNMAEGMLLSPPRFDNFAATDYEYMDEDPNLWGFPNY*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||