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Report for Sequence Feature Glyma15g02890

Feature Type:gene_model
Chromosome:Gm15
Start:2020254
stop:2021398
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g02890
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G17640AT Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:6067394-6069098 REVERSE LENGTH=369 SoyBaseE_val: 7.00E-17ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
PTHR24012Panther FAMILY NOT NAMED JGI ISS
PTHR24012:SF14Panther SUBFAMILY NOT NAMED JGI ISS
PF00076PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JGI ISS
UniRef100_E5GCB7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Heterogeneous nuclear ribonucleoprotein a1 n=1 Tax=Cucumis melo subsp. melo RepID=E5GCB7_CUCME SoyBaseE_val: 4.00E-24ISS
UniRef100_I1MD03UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MD03_SOYBN SoyBaseE_val: 4.00E-167ISS

Expression Patterns of Glyma15g02890
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g02890
ParalogEvidenceComments
Glyma13g42480 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g02890 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma15g02890
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g02890
>Glyma15g02890.1   sequence type=CDS   gene model=Glyma15g02890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAATTGACCCAAAATTTTCGTGGCGAAGAGATTTTGCTGCTGATTGTTTTATGCCCTACTTGGTTGAAGCTGAATATGGCCCTGGCCTCTTATTTATCTTGTCATTTTTTAATTACTTCAGCAAATATGGAGAAGCCACGGGGGTTTGGCTGACTAATGCACCTTATGGCAATGTTATTGAGTGCCAAATCATGCTAGATCACAATACTGGGCGATCTAGAGGCTTTGGATTTGTCACTTTTGACGATGAAGATTCAGTTGAAAAGGTTTTTTCAGGGGGAAAAGTTCATGAAATTGGAGGCAAGCAGGTTACCCAACAAGATCTGGGGTTGATTACTGCAACACCTCAAGAAAAGTCATATGATGGTTTTGGCAATGGAATGGATGGATATGGTGGGAATAGTTCCAGAAATCGTAATCATGGAAAAAGAGGTGGACAGTATACAGATTCTGAAATGAGCGGAGCATTTGGTCATTTTGATGGGAACTTTGAGGGAAGTGTTGCCACTGTTTATGGTGGCTATGGATTTGGATATGGTGGGCCAATGTATTGCTTTGGTGGTTATGGACTCAATTCTTATGGTAATCCTGGGGGTTATGGTGGCGGCATTTCTTCCTATGAAGATAGTGGTGGCTATGACAGCGGCAAAGTGGCTAAGAAGGATGATGGTCCTACGTACAACCATCCTTACTGGAAGTGA
Predicted protein sequences of Glyma15g02890
>Glyma15g02890.1   sequence type=predicted peptide   gene model=Glyma15g02890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
QIDPKFSWRRDFAADCFMPYLVEAEYGPGLLFILSFFNYFSKYGEATGVWLTNAPYGNVIECQIMLDHNTGRSRGFGFVTFDDEDSVEKVFSGGKVHEIGGKQVTQQDLGLITATPQEKSYDGFGNGMDGYGGNSSRNRNHGKRGGQYTDSEMSGAFGHFDGNFEGSVATVYGGYGFGYGGPMYCFGGYGLNSYGNPGGYGGGISSYEDSGGYDSGKVAKKDDGPTYNHPYWK*






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