Glyma15g02790 - SoyBase

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Report for Sequence Feature Glyma15g02790

Feature Type:	gene_model
Chromosome:	Gm15
Start:	1939036
stop:	1946519
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g02790

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G72970	AT	Annotation by Michelle Graham. TAIR10: Glucose-methanol-choline (GMC) oxidoreductase family protein \| chr1:27452872-27455706 FORWARD LENGTH=594	SoyBase	E_val: 0	ISS
GO:0006066	GO-bp	Annotation by Michelle Graham. GO Biological Process: alcohol metabolic process	SoyBase	N/A	ISS
GO:0007267	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell-cell signaling	SoyBase	N/A	ISS
GO:0009553	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo sac development	SoyBase	N/A	ISS
GO:0010430	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid omega-oxidation	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0008812	GO-mf	Annotation by Michelle Graham. GO Molecular Function: choline dehydrogenase activity	SoyBase	N/A	ISS
GO:0016614	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on CH-OH group of donors	SoyBase	N/A	ISS
GO:0016832	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aldehyde-lyase activity	SoyBase	N/A	ISS
GO:0046593	GO-mf	Annotation by Michelle Graham. GO Molecular Function: mandelonitrile lyase activity	SoyBase	N/A	ISS
GO:0050660	GO-mf	Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding	SoyBase	N/A	ISS
KOG1238	KOG	Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family)	JGI		ISS
PTHR11552	Panther	GLUCOSE-METHANOL-CHOLINE (GMC) OXIDOREDUCTASE	JGI		ISS
PTHR11552:SF31	Panther	gb def: fldc protein [sphingomonas sp. lb126]	JGI		ISS
PF00732	PFAM	GMC oxidoreductase	JGI		ISS
PF05199	PFAM	GMC oxidoreductase	JGI		ISS
UniRef100_G7IUI3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein HOTHEAD n=1 Tax=Medicago truncatula RepID=G7IUI3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MCZ3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MCZ3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g02790

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g02790

Paralog	Evidence	Comments
Glyma13g42630	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g02790 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g024200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g02790

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g02790

Limit To All Plant Sequences

>Glyma15g02790.1   sequence type=CDS   gene model=Glyma15g02790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTTCATTGGTGCAGTCAAATTCTTGCTGCAGTACTTAGTTCTATTATGCCTCCTCAACTATCTACCTCTTTCTCAAGGTAAGCAGAACTGGAATGAAGGGTACCCATTTATAAGAAGAGCAAGTTCATTGGGTTATAATGGGAAAAGTGGAGGGTATGATTATATAATAGTGGGGGGTGGAACAGCAGGGTGTCCATTGGCTGCAACCCTGTCTCAGAAGTTCAAAGTTCTGCTGCTTGAAAGAGGAGGAGTCCCTTTCAACAACCCTAATGTGTCATTTCTGCACAACTTTCACATTACATTGGCAGACACTTCACCAACTTCGGCTTCTCAGTACTTCATTTCAACAGATGGAGTCCTCAATGCAAGGGGAAGGGTTTTGGGTGGTGGCAGTTCCATTAACGCTGGCTTCTACACTAGAGCAGACCCAAGATTTATAAGGAAGGTGGGGTGGGATACAAAGCTAGTGAATGAGTCATATCCTTGGGTTGAGAAGCAGATTGTTCACCGGCCAAAGTTTTCAGATTGGCAGAGAGCAGTTAGGGACGGGCTTCTAGCAGCTGGTGTGTCTCCTTTCAATGGCTTCACCTATGATCACAAGTACGGAACCAAAGTTGGTGGAACCATTTTTGACAGATTTGGCCGTCGCCACACAGCTGCTGAATTGCTTGCTTCTGCCAACCCTCACAAACTTACTGTTTTGATCCATGCCACTGTCCAAAACATTGTTTTTGATACAACAGGAAAAAGACCAAAAGCTACCGGGGTTATTTTCAAGGATGAAAATGGGAAGCAGCATGAGGCGTATCTAGGAAATGACAGGCAGAGTGAGGTGATTGTGTCTAGTGGGGCACTTGGGACTCCTCAATTGCTATTGCTGAGTGGAATTGGCCCAAAAGCAGAGCTTCAGAAATTGAACATCCCTGTGGTGCTTGACAACCAATTTGTTGGGAAAGGCATGGCTGATAACCCCATGAACACAATTTTTGTTCCTTCCAAAAGATCAGTTCAGCAGTCACTCATAGAAACTGTTGGTATTACCAATTTGGGTGTCTACATTGAGACCAGCAGTGGGTTTGGCCAGTCCAAAGACAGCATTCACTGCCACCATGGTATCTTGTCAGCTGAGATTGGACAGTTGTCCACAATTCCACCAAAGCAAAGATCACAAGAAGCTGTTAAAGCTTATGTGAAGAGCAAGAGAGACATACCAGTTGAAGCATTCAGGGGAGGGTTCATATTGTCAAAAGTTGCGAACCCTTGGTCAACAGGTGAGCTCAAGTTGAAAAACACCAACGTGGAGGACAACCCTGCTGTTACCTTCAACTACTTCAGCCACCCTTATGATCTTAGGCGCTGTGTGGAGGGTATTCGCTTGGCGATAAAGGTTGTCCAGTCAGAACACGTCACAAACTACACTTTGTGTGAGAGAGAAACTGCAGAGAAAATGCTTAACCTCAGTGTGAAGGCCAATATCAACCTCATTCCCAAGCGCCCCAATGACACAAAGTCAGTAGAACAGTTTTGTAGAGACTCCGTGATCACTATTTGGCACTACCATGGTGGGTGCCATGTGGGGAAGGTGGTTAACTCTGAGCATAAGGTTCTTGGTGTTGATAGACTCCGTGTGGTTGATGGCTCAACATTTTCTGAGTCACCAGGAACCAACCCTCAAGCTACTGTGATGATGATGGGCAGGTACATGGGACTGAAGATTTTAAGGGACAGGTTGGGAAAATTGGCTGGTATTTAA

Predicted protein sequences of Glyma15g02790

Limit To All Plant Sequences

>Glyma15g02790.1   sequence type=predicted peptide   gene model=Glyma15g02790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFIGAVKFLLQYLVLLCLLNYLPLSQGKQNWNEGYPFIRRASSLGYNGKSGGYDYIIVGGGTAGCPLAATLSQKFKVLLLERGGVPFNNPNVSFLHNFHITLADTSPTSASQYFISTDGVLNARGRVLGGGSSINAGFYTRADPRFIRKVGWDTKLVNESYPWVEKQIVHRPKFSDWQRAVRDGLLAAGVSPFNGFTYDHKYGTKVGGTIFDRFGRRHTAAELLASANPHKLTVLIHATVQNIVFDTTGKRPKATGVIFKDENGKQHEAYLGNDRQSEVIVSSGALGTPQLLLLSGIGPKAELQKLNIPVVLDNQFVGKGMADNPMNTIFVPSKRSVQQSLIETVGITNLGVYIETSSGFGQSKDSIHCHHGILSAEIGQLSTIPPKQRSQEAVKAYVKSKRDIPVEAFRGGFILSKVANPWSTGELKLKNTNVEDNPAVTFNYFSHPYDLRRCVEGIRLAIKVVQSEHVTNYTLCERETAEKMLNLSVKANINLIPKRPNDTKSVEQFCRDSVITIWHYHGGCHVGKVVNSEHKVLGVDRLRVVDGSTFSESPGTNPQATVMMMGRYMGLKILRDRLGKLAGI*

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