SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G19520 | AT | Annotation by Michelle Graham. TAIR10: Transducin family protein / WD-40 repeat family protein | chr2:8456006-8459235 FORWARD LENGTH=507 | SoyBase | E_val: 1.00E-176 | ISS |
| GO:0006281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA repair | SoyBase | N/A | ISS |
| GO:0009826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth | SoyBase | N/A | ISS |
| GO:0009908 | GO-bp | Annotation by Michelle Graham. GO Biological Process: flower development | SoyBase | N/A | ISS |
| GO:0009965 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis | SoyBase | N/A | ISS |
| GO:0010090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis | SoyBase | N/A | ISS |
| GO:0010224 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to UV-B | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005730 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleolus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0080008 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex | SoyBase | N/A | ISS |
| GO:0046872 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metal ion binding | SoyBase | N/A | ISS |
| KOG0264 | KOG | Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 | JGI | ISS | |
| PTHR22850 | Panther | WD40 REPEAT FAMILY | JGI | ISS | |
| PTHR22850:SF14 | Panther | WD-40 REPEAT PROTEIN | JGI | ISS | |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
| UniRef100_C3VEZ5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: FVE n=1 Tax=Dimocarpus longan RepID=C3VEZ5_9ROSI | SoyBase | E_val: 2.00E-175 | ISS |
| UniRef100_I1MCZ1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MCZ1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma15g02770 not represented in the dataset |
Glyma15g02770 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g024000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g02770.1 sequence type=CDS gene model=Glyma15g02770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGCAGATGGGGTCCTCTGCTAGAGCAAGCCACTTTCAGGAACCGTCACCGTCTCTATCTTTCCGAACAGACTGATGGCAGTGTTCCCAATACTCTTGTTAAACCCAGGGTTGCTGCAGAGTTTAATGAAGAAGCTCGCTCTCCCTTTTTCAAGAAGTACAAAACTGTATTACATCCTGGCGAGGTGAATAGAATCAGGGAGTTTCAGCAAAACAGTAAGATAGTAGCTACTCACACGGATTGTCCTGAGGTACTTATATGGGATGTTGAAACTCAACCTAATCGTCATGCTGTTCTGGGGGCTACCACTTCTCGTCCAGACTTGGTATTAACTGGTCATAAGGATAATGCTGAATTTGCTCTGGCTATGTGCCCAACTGAACCCTTTATTCTTTCTGGAGGTTGGAGTCTTTTTATTGCCTTCTCATCACAAAAGATGTCAAGGAGGCCTGCTATGGAGTTCTGTAGTGTAGGTGATGATTCTCGCCTTATACTCTGGGATGCACGACTTGGATCTGCTCCAGTTGTTAAGGTTGACAAGGCGCATAATGGATATCTTCATTGTGTTGATTGGAGTCCTCATGATATAAATTTTATCCTGACTGGTTCTGCTGATAATACAATTAACATGTTCGATCGTCGAAATCTTACAAGTGGTGGAGTTGGATCACCTATCTATAAATTTGAAGGTCATGATGCAGCAGTCCTCTGTACAGTTTTAATGTGCACTTCAGTTTTGGGCATTTGGAGTCCTGACAAGCCATCTGTATTTGGAAGTACTGCTGAAGATGGTATTTTAAACATCTGGGACCATGACAAGTCATGCATAGAATCCTGTTGGCAGGAAAAAAATGGACCTTTTTACTCTGCTAGTTCAAAAGCATCAAATACTCCCCCTGGTTTATTCTTTCGACATGCTGGGCATAGGGACAAGGTTGTTGACTTCCACTGGAATGCATCTGATCCATGGACAATTGTTAGTGTTTCTGATGATTGTGAAAGTAGTGGTGGAGGGGGCACCCTACAGATTGTGGCACAAGTGGGGTTGAATTTTGCCAAACCTAGTTATACTCCCTTGTTTGACTTATTGTATAAAGTAGTGGATATGGCGGATGATAGAGATATAATATATCGACCAGAGGAAGAGGTGCTCACTGAGCTGGATAAATTCAGATCACATATTTTTGGATGCAACTCATGA
>Glyma15g02770.1 sequence type=predicted peptide gene model=Glyma15g02770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GRWGPLLEQATFRNRHRLYLSEQTDGSVPNTLVKPRVAAEFNEEARSPFFKKYKTVLHPGEVNRIREFQQNSKIVATHTDCPEVLIWDVETQPNRHAVLGATTSRPDLVLTGHKDNAEFALAMCPTEPFILSGGWSLFIAFSSQKMSRRPAMEFCSVGDDSRLILWDARLGSAPVVKVDKAHNGYLHCVDWSPHDINFILTGSADNTINMFDRRNLTSGGVGSPIYKFEGHDAAVLCTVLMCTSVLGIWSPDKPSVFGSTAEDGILNIWDHDKSCIESCWQEKNGPFYSASSKASNTPPGLFFRHAGHRDKVVDFHWNASDPWTIVSVSDDCESSGGGGTLQIVAQVGLNFAKPSYTPLFDLLYKVVDMADDRDIIYRPEEEVLTELDKFRSHIFGCNS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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