Report for Sequence Feature Glyma15g02760
Feature Type: gene_model
Chromosome: Gm15
Start: 1912872
stop: 1916219
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g02760
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G17665 AT
Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 11 growth stages; Has 149 Blast hits to 146 proteins in 39 species: Archae - 0; Bacteria - 4; Metazoa - 21; Fungi - 5; Plants - 30; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink). | chr1:6072432-6074484 REVERSE LENGTH=338
SoyBase E_val: 2.00E-77 ISS
GO:0007623 GO-bp
Annotation by Michelle Graham. GO Biological Process: circadian rhythm
SoyBase N/A ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_A6M8U7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: CA-responsive protein n=1 Tax=Brassica oleracea RepID=A6M8U7_BRAOL
SoyBase E_val: 2.00E-72 ISS
UniRef100_I1MCZ0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MCZ0_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g02760
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma15g02760
Paralog Evidence Comments
Glyma13g42670 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g02760 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g023900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g02760
Transcripts of Glyma15g02760
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g02760.2 sequence type=transcript gene model=Glyma15g02760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GTGAAAGGGGAAAACCCTTGGCGGAGAGATTTTTTTACCATGTTTTGCTCATTTTCAATCTAGAAATGTAACTTTTATTTTCTTTTTACTATTTTCTATTCTGGGTTCCTAACACCAAGATTTCTATGCTCTGTTATTCTGATTTTTTTACATCCTCTTATTGTAACAGAGCTGATGTGATTCAACGTAAGTTTGTAATAACGAAGGCTTTACTATGTAAGGCAGATAGATCTTCTTTTGACCGCCTTCATCAACAGATATACAAGCTAGAATTAGAGCAAAAACGTTTAGAAGAGGATGTTTTTGTTTATAACTCGCTTCAACAACAGCTTAAACTGTCACCAGCCTACCAGAAGATGCTTGAACTTGGAGCTTGCATGGAGAAGGAAAAATCAAGTGAACTGGGAGAGAACAGAGATGATGATTTTGCTGAAATTTCTTTTGAGGAATTGTTAGCACAGGAGAAGAAAGATTCATTTTGGCAAAAAAATGGGAAATCAAGACTAAGCTCAAGCTAATAACACTACTAGCTTGGTTAACTGCAACCTCCTGAGTTAGTTTAGTATGTACATCCAATACCTGTAGTAGTGTGTTGTCACAGGAATGTTCTTTTTGGTTCTTTGCCTGTGCCAATTTTGGTTGTTAATGGAATATAGATGATACAACTTTGAGTTTATTTTAGAAATTTATGAATGGAAGCCAGTTAAATTGAAATTAATGCGACATATGATATAGCATTGTTACCCTTTTAGGGCCAAGGGATAAGAAACAAGAAAAAGAGGATGGCTGAGACTATCATTGTCACCAATTATGTTTAGATAACCAACAGTTAAAACAACGATGTAT
Coding sequences of Glyma15g02760
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g02760.1 sequence type=CDS gene model=Glyma15g02760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGCCTCCACCTTCCTATTCCTATTCCCCATTCCCATTCTCACTTGAGCGCCACACACAGATACAAATGCACGATCCCATTCTCTTCTTCCTCTTCTTCGCGTCCCTCTCCTCCCTTCTCTTCCTCTCTTTCTCTCTCTTCAAACGCTTCTCGACAAAAAAGGAACACCACCACCATACTCAAAAAGTTCCCAGCTTGTTGGGAGAGGAACAGAGACCCAAGAAGAAGAGAAAGAAGCCCAAGAAGAAGAGAACCCAAGGTGACGACGCCGCCAATTCGGGTTCGGGTTCCGACTCGGGGCTCCGACTTGAATCCACGTGCCAGTATCCGTTTACGTCTTCCAGTAGCGTTATGCAGAGAAAGATCAAACAGCAGTATGATGAGCTCGTCAGATGCAACCACTTGAAGAAACTCACGCTGCCCCAGGTTGTGCAGTTTGCTAATAGTTTGGTTGATGCTAGAAATGAGCTACAACACAAAGCTGATGTGATTCAACGTAAGTTTGTAATAACGAAGGCTTTACTATGTAAGGCAGATAGATCTTCTTTTGACCGCCTTCATCAACAGATATACAAGCTAGAATTAGAGCAAAAACGTTTAGAAGAGGATGTTTTTGTTTATAACTCGCTTCAACAACAGCTTAAACTGTCACCAGCCTACCAGAAGATGCTTGAACTTGGAGCTTGCATGGAGAAGGAAAAATCAAGTGAACTGGGAGAGAACAGAGATGATGATTTTGCTGAAATTTCTTTTGAGGAATTGTTAGCACAGGAGAAGAAAGATTCATTTTGGCAAAAAAATGGGAAATCAAGACTAAGCTCAAGCTAA
>Glyma15g02760.2 sequence type=CDS gene model=Glyma15g02760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCTCTGTTATTCTGATTTTTTTACATCCTCTTATTGTAACAGAGCTGATGTGATTCAACGTAAGTTTGTAATAACGAAGGCTTTACTATGTAAGGCAGATAGATCTTCTTTTGACCGCCTTCATCAACAGATATACAAGCTAGAATTAGAGCAAAAACGTTTAGAAGAGGATGTTTTTGTTTATAACTCGCTTCAACAACAGCTTAAACTGTCACCAGCCTACCAGAAGATGCTTGAACTTGGAGCTTGCATGGAGAAGGAAAAATCAAGTGAACTGGGAGAGAACAGAGATGATGATTTTGCTGAAATTTCTTTTGAGGAATTGTTAGCACAGGAGAAGAAAGATTCATTTTGGCAAAAAAATGGGAAATCAAGACTAAGCTCAAGCTAA
Predicted protein sequences of Glyma15g02760
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g02760.1 sequence type=predicted peptide gene model=Glyma15g02760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEPPPSYSYSPFPFSLERHTQIQMHDPILFFLFFASLSSLLFLSFSLFKRFSTKKEHHHHTQKVPSLLGEEQRPKKKRKKPKKKRTQGDDAANSGSGSDSGLRLESTCQYPFTSSSSVMQRKIKQQYDELVRCNHLKKLTLPQVVQFANSLVDARNELQHKADVIQRKFVITKALLCKADRSSFDRLHQQIYKLELEQKRLEEDVFVYNSLQQQLKLSPAYQKMLELGACMEKEKSSELGENRDDDFAEISFEELLAQEKKDSFWQKNGKSRLSSS*
>Glyma15g02760.2 sequence type=predicted peptide gene model=Glyma15g02760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLCYSDFFTSSYCNRADVIQRKFVITKALLCKADRSSFDRLHQQIYKLELEQKRLEEDVFVYNSLQQQLKLSPAYQKMLELGACMEKEKSSELGENRDDDFAEISFEELLAQEKKDSFWQKNGKSRLSSS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
