SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G55140 | AT | Annotation by Michelle Graham. TAIR10: Ribonuclease III family protein | chr1:20572503-20574332 REVERSE LENGTH=237 | SoyBase | E_val: 2.00E-88 | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0004525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ribonuclease III activity | SoyBase | N/A | ISS |
| UniRef100_B9SN41 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SN41_RICCO | SoyBase | E_val: 3.00E-108 | ISS |
| UniRef100_I1MCY8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MCY8_SOYBN | SoyBase | E_val: 3.00E-169 | ISS |
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Glyma15g02740 not represented in the dataset |
Glyma15g02740 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g023700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g02740.2 sequence type=transcript gene model=Glyma15g02740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACTGCCACTTTATCACTCGCTCTTTCTTTCTGCGTGTTGTTGGCACAATGGAGTCTCTGTTATCTGTAACATCTTCTTCTCTGAAATTCTTAGTGAGAGCTTCATGGGACACACAGCAGAGACTCCCTTACAATCCCAACGCTCCCAGAAAGCTTAAGAATAACATTGTTGCAACTCCCACTCCCACTCCTCCAATTACGCGCAAGAGGGAGCAATACATTTCCGATCTTCTCAAGCGCGCCACTCCTCTCCCCACCATAGGGCATATAGAAGAAGTACAAGATGAAACCTATTTGGGGTATGAGAAATGGCTCCCAACTCCACCAAAAGTGGTCAAGCCTCGTTCCGTCTTTAATGCTGCTACTTTAGCCTATATTGGTGATTGCATATACGAGCTATATGCCCGTAGGCACTTTTTATTCCCTCCCCTTAGTATTGAAGAATACAATGATCGTGTTATGGCAGTTGTTCGTTGCGAAGCTCAAGATGCATTGCTGCAGAAACTTCTTGAGAGTAACTTCTTATCAGATCAGGAGAGGGATGTTCTTCGATGGGGAAAGAACATTGTTTCCAGCAAAACTAAGACGAAAAAACGTGCTGGTGCAGCTGTGTATAATAGAGCATCTTCACTAGAAACACTAGTTGGCTATTTGTATTTGACAAATGTGAATCGCTTGGAAAAGCTGATGTTAGAGTTGGGATTCTCAGTTGACTCTTCCGTGGCTTTGAATGTTGAGGAAATAGTAAAAACTGGAGTTAACAAAGAAACTACAGAAACTGAAATAAGAAAGGAACATAAATGGAGTAATTGACTAATTGGCAGGTGAGTTGAACAATGGATAAATATGATCTTCAGGCAATCGGAATTCCACAGGAGCAGGCAAAACAGTTTCTGAAGATTTTGTTTGATCCATTGTATTCTTCTGCAAAGCATGACTTCCTCTTTTACTTTGGCGGGAGAAGCTGTATCAGAACCACATTCCAACAGCATATATTTCCATACTATAGATTAGAAGCCTTCGAGGTCCTTCATAACAATTTTTCTGCTGCACAAAGGTTCTGGCACCGTAGTTTGTTAGTAATGTATCTTTTTCAGAGGCGTAAAGTCAGAAGAAGATAGTAATGCAGCGAAACTTTTGGTTTTATGTGATAGATTCGTGATGGGATTTGCAAATTTTGCTCGAACTTTGTAGAGTTGGTTGGTTCATGTGCGAATTTTGTTGACTGAATATTAGGGACAGAGACCAAGATGTCTATTTGTATTATTACTTTGGAATTATTACCTCTAGTCTTTTAACAACTTCACAAGATATTAACAGTATTCAAATTATTAACAATTTGAATAGTTTGGAGGAATCTTTTATTTTTAAAATGTTCTCATTCTCATAAAAGGGATCATAAG
>Glyma15g02740.1 sequence type=CDS gene model=Glyma15g02740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTCTCTGTTATCTGTAACATCTTCTTCTCTGAAATTCTTAGTGAGAGCTTCATGGGACACACAGCAGAGACTCCCTTACAATCCCAACGCTCCCAGAAAGCTTAAGAATAACATTGTTGCAACTCCCACTCCCACTCCTCCAATTACGCGCAAGAGGGAGCAATACATTTCCGATCTTCTCAAGCGCGCCACTCCTCTCCCCACCATAGGGCATATAGAAGAAGTACAAGATGAAACCTATTTGGGGTATGAGAAATGGCTCCCAACTCCACCAAAAGTGGTCAAGCCTCGTTCCGTCTTTAATGCTGCTACTTTAGCCTATATTGGTGATTGCATATACGAGCTATATGCCCGTAGGCACTTTTTATTCCCTCCCCTTAGTATTGAAGAATACAATGATCGTGTTATGGCAGTTGTTCGTTGCGAAGCTCAAGATGCATTGCTGCAGAAACTTCTTGAGAGTAACTTCTTATCAGATCAGGAGAGGGATGTTCTTCGATGGGGAAAGAACATTGTTTCCAGCAAAACTAAGACGAAAAAACGTGCTGGTGCAGCTGTGTATAATAGAGCATCTTCACTAGAAACACTAGTTGGCTATTTGTATTTGACAAATGTGAATCGCTTGGAAAAGCTGATGTTAGAGTTGGGATTCTCAGTTGACTCTTCCGTGGCTTTGAATGTTGAGGAAATAGTAGCAGGTGAGTTGAACAATGGATAA >Glyma15g02740.2 sequence type=CDS gene model=Glyma15g02740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTCTCTGTTATCTGTAACATCTTCTTCTCTGAAATTCTTAGTGAGAGCTTCATGGGACACACAGCAGAGACTCCCTTACAATCCCAACGCTCCCAGAAAGCTTAAGAATAACATTGTTGCAACTCCCACTCCCACTCCTCCAATTACGCGCAAGAGGGAGCAATACATTTCCGATCTTCTCAAGCGCGCCACTCCTCTCCCCACCATAGGGCATATAGAAGAAGTACAAGATGAAACCTATTTGGGGTATGAGAAATGGCTCCCAACTCCACCAAAAGTGGTCAAGCCTCGTTCCGTCTTTAATGCTGCTACTTTAGCCTATATTGGTGATTGCATATACGAGCTATATGCCCGTAGGCACTTTTTATTCCCTCCCCTTAGTATTGAAGAATACAATGATCGTGTTATGGCAGTTGTTCGTTGCGAAGCTCAAGATGCATTGCTGCAGAAACTTCTTGAGAGTAACTTCTTATCAGATCAGGAGAGGGATGTTCTTCGATGGGGAAAGAACATTGTTTCCAGCAAAACTAAGACGAAAAAACGTGCTGGTGCAGCTGTGTATAATAGAGCATCTTCACTAGAAACACTAGTTGGCTATTTGTATTTGACAAATGTGAATCGCTTGGAAAAGCTGATGTTAGAGTTGGGATTCTCAGTTGACTCTTCCGTGGCTTTGAATGTTGAGGAAATAGTAAAAACTGGAGTTAACAAAGAAACTACAGAAACTGAAATAAGAAAGGAACATAAATGGAGTAATTGA
>Glyma15g02740.1 sequence type=predicted peptide gene model=Glyma15g02740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESLLSVTSSSLKFLVRASWDTQQRLPYNPNAPRKLKNNIVATPTPTPPITRKREQYISDLLKRATPLPTIGHIEEVQDETYLGYEKWLPTPPKVVKPRSVFNAATLAYIGDCIYELYARRHFLFPPLSIEEYNDRVMAVVRCEAQDALLQKLLESNFLSDQERDVLRWGKNIVSSKTKTKKRAGAAVYNRASSLETLVGYLYLTNVNRLEKLMLELGFSVDSSVALNVEEIVAGELNNG* >Glyma15g02740.2 sequence type=predicted peptide gene model=Glyma15g02740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESLLSVTSSSLKFLVRASWDTQQRLPYNPNAPRKLKNNIVATPTPTPPITRKREQYISDLLKRATPLPTIGHIEEVQDETYLGYEKWLPTPPKVVKPRSVFNAATLAYIGDCIYELYARRHFLFPPLSIEEYNDRVMAVVRCEAQDALLQKLLESNFLSDQERDVLRWGKNIVSSKTKTKKRAGAAVYNRASSLETLVGYLYLTNVNRLEKLMLELGFSVDSSVALNVEEIVKTGVNKETTETEIRKEHKWSN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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