Glyma15g02720 - SoyBase

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Report for Sequence Feature Glyma15g02720

Feature Type:	gene_model
Chromosome:	Gm15
Start:	1869887
stop:	1875972
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g02720

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G55170	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 13439 Blast hits to 8993 proteins in 828 species: Archae - 344; Bacteria - 1469; Metazoa - 6958; Fungi - 1008; Plants - 683; Viruses - 29; Other Eukaryotes - 2948 (source: NCBI BLink). \| chr1:20580578-20581706 FORWARD LENGTH=283	SoyBase	E_val: 2.00E-81	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_A2Q466	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase PKN/PRK1, effector n=2 Tax=Medicago truncatula RepID=A2Q466_MEDTR	SoyBase	E_val: 1.00E-152	ISS
UniRef100_I1MCY7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MCY7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g02720

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g02720

Paralog	Evidence	Comments
Glyma13g42690	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g02720 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g023600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g02720

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g02720

Limit To All Plant Sequences

>Glyma15g02720.2   sequence type=transcript   gene model=Glyma15g02720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAACGACGCCGTAAAAGCCAAGGATACAATACAATAGTGCTTTGGGATCAATCCTTTATTCATTCATTCATTGTAGCGTTCTTGCTGGGTTTGCTGGGTTTGCCGTGTTTGCGTTCTTTGTTCCATCGGAGAAGACCCTTTTCCCTTTTAGCTTCACTCTTTTCTCTCTCTTTATCTGTCAACGATCCAAGTCTACTTCTGAAGCATCTTTTTACTGTCACTTGACATGGCATCAAGACACCGTGTTCACAGAGAACCCTTGAATGCTCGAAGGGGTTACCCACCGGAAGGGCCATATGCTCGGGTGGCTCCCATGCCTCGACCACTGCCTCCTATTCCTCCTCATCCGTCTGTGTTGGAAGAGGAACTTGAATTTCAGCATGCCGAGATGCGAAGGCTCGTGGCAGACAACAGGAGGTTGATTGATGACCGAATGGCGTTGCAGCGAGACCTTGGGGCCGCTAAGGAGGAGCTTCATCGCATGAATCTTGCCATTGGTGACATTCGCGCCGAGCATGAGGCGCATTCGAGGGAGCTTGTTGAGAAAGGCATGAAGATGGAGGCTGACCTTAGGGCAAATGAGCCTTTGAAGAATGAGGTCATGCAACTGCGATCTGAAGTTAAGAAACTTAACAATCTCAAACAAGAACTGACAGGGAAGGTTCAGACACTCACTCAAGATGTTGCAAGGTTACAAGCAGACAATCAACAAATTCCTATGATGAGGGCTAAGATTGATGGCCTGCACCAAGAGCTAATGCATGCCAGAACCATGGTGGATTACGAAAAGAAGGCAAACATGGAGTTCATGGAACAGAGGCAGTCAATGGAGAAAAATTTGGTTTCCATGGCCCGGGAAGTTGAGAAATTACGTGCTGAGCTTGCTAGTGCTGATAGCAGACATTGGGGTGCTGGTATGTCAGGTATGACAGGTGGGCCTTATGGAACAAAATTTGGTAGCCCAGAGGGTTTTCCAGCTCCATATGCAGATGGATATGGCAGTGTTCACCTGGGTGCTGCAGATAAAGGTCCTATGTATGGGGCGGGTGCTGCCTCAAGAAAGGAGCATGAGAAGCCACACATGAATCGTCGTTGAAATTCAAGTTATTGCTATTGGTGATGAAGAAAGGCTTGCTATCACTTTGCCTTCTCTATTTGCAGAATAGCTGAGATTGAGTTTGATGTCCTTCTGTGTATGCATGCGACAACAGTGGTCATTTTATCTGGAACTCTGGATATATTTAGTCCTAAACTGGCATATATGGAAAGCTGGGATTCTTGTTTGGGACTGAGAAGTAACGAAAAACCCCATATATTTATTTTGAAGAACACTGGTAGGTTCTTTATTATTTCAAAATGTGAAATCAGTTGAAGCTTTTATTTGACTGAAGAACCATTGGTCACTGGTGGATGCATGTATTTTACCTGGCTGTGATGGATTGAGATAAACGCATTAGCACGCGTTTGTTGTGTTGGATCACATTATTGTGAGATTGGAAATGAAAGCTTTGGTGGTAAGCAACTAAGCATGGGTTGTTTCTAACTTACAAATGTTAGTTTACTTTGCGAGATGGATCATGAGTCCTTGCTTCAGATATTGCTTACTGTGTCGTGTCTGAGGGATGCCTCAGTATCTATCTTGACCTATTGTTCAGTACATGCCCAAATTCAGATTGATTCTACTCATCCACCACCTATTGTTTTGAGGCTGGCTCGAGAAAATGAAGCCTCTTTTACACTTTTTTTGTTGTTCCTCATTGGATTTGGCATTTAAAGATAGTCATGTTTGCAACGTGTGGAATAATATCCATGCGAATCCTACACATTGCAGACAACTCAGCATTTCATATTTTGTTGATTTGTGTTATCTTCATGCGTGGACAGCTTTACGTTCTCATCTTGGTTATGATCAAAGCTGCTCAACAGGAGTTGAGAGACTATTGATGCGGATGGTTTCCAATTTCTTACCCATCTATTTCAGTTTTCTGTTTCCTTAATGGTTGATTTTGGTGCAGTTGCTTTTGATCGTGTGATTGCGGTTTATTTTTCACTGAACTAGATGCCCGTTACTTATTAGGTTTTACTATTTTAAGGGTTATAAAGTTGTGGCCGAATTTTCTATTTGGTCTTGCAAAAATAGCATGATTTTTTTTTTTCATTTGGTAACTTATTTAGTATTTTGTAAATTCCTTTATCCATTCTTA

>Glyma15g02720.3   sequence type=transcript   gene model=Glyma15g02720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAACGACGCCGTAAAAGCCAAGGATACAATACAATAGTGCTTTGGGATCAATCCTTTATTCATTCATTCATTGTAGCGTTCTTGCTGGGTTTGCTGGGTTTGCCGTGTTTGCGTTCTTTGTTCCATCGGAGAAGACCCTTTTCCCTTTTAGCTTCACTCTTTTCTCTCTCTTTATCTGTCAACGATCCAAGTCTACTTCTGAAGCATCTTTTTACTGTCACTTGACATGGCATCAAGACACCGTGTTCACAGAGAACCCTTGAATGCTCGAAGGGGTTACCCACCGGAAGGGCCATATGCTCGGGTGGCTCCCATGCCTCGACCACTGCCTCCTATTCCTCCTCATCCGTCTGTGTTGGAAGAGGAACTTGAATTTCAGCATGCCGAGATGCGAAGGCTCGTGGCAGACAACAGGAGGTTGATTGATGACCGAATGGCGTTGCAGCGAGACCTTGGGGCCGCTAAGGAGGAGCTTCATCGCATGAATCTTGCCATTGGTGACATTCGCGCCGAGCATGAGGCGCATTCGAGGGAGCTTGTTGAGAAAGGCATGAAGATGGAGGCTGACCTTAGGGCAAATGAGCCTTTGAAGAATGAGGTCATGCAACTGCGATCTGAAGTTAAGAAACTTAACAATCTCAAACAAGAACTGACAGGGAAGGTTCAGACACTCACTCAAGATGTTGCAAGGTTACAAGCAGACAATCAACAAATTCCTATGATGAGGGCTAAGATTGATGGCCTGCACCAAGAGCTAATGCATGCCAGAACCATGGTGGATTACGAAAAGAAGGCAAACATGGAGTTCATGGAACAGAGGCAGTCAATGGAGAAAAATTTGGTTTCCATGGCCCGGGAAGTTGAGAAATTACGTGCTGAGCTTGCTAGTGCTGATAGCAGACATTGGGGTGCTGGTATGTCAGGTGGGCCTTATGGAACAAAATTTGGTAGCCCAGAGGGTTTTCCAGCTCCATATGCAGATGGATATGGCAGTGTTCACCTGGGTGCTGCAGATAAAGGTCCTATGTATGGGGCGGGTGCTGCCTCAAGAAAGGAGCATGAGAAGCCACACATGAATCGTCGTTGAAATTCAAGTTATTGCTATTGGTGATGAAGAAAGGCTTGCTATCACTTTGCCTTCTCTATTTGCAGAATAGCTGAGATTGAGTTTGATGTCCTTCTGTGTATGCATGCGACAACAGTGGTCATTTTATCTGGAACTCTGGATATATTTAGTCCTAAACTGGCATATATGGAAAGCTGGGATTCTTGTTTGGGACTGAGAAGTAACGAAAAACCCCATATATTTATTTTGAAGAACACTGGTAGGTTCTTTATTATTTCAAAATGTGAAATCAGTTGAAGCTTTTATTTGACTGAAGAACCATTGGTCACTGGTGGATGCATGTATTTTACCTGGCTGTGATGGATTGAGATAAACGCATTAGCACGCGTTTGTTGTGTTGGATCACATTATTGTGAGATTGGAAATGAAAGCTTTGGTGGTAAGCAACTAAGCATGGGTTGTTTCTAACTTACAAATGTTAGTTTACTTTGCGAGATGGATCATGAGTCCTTGCTTCAGATATTGCTTACTGTGTCGTGTCTGAGGGATGCCTCAGTATCTATCTTGACCTATTGTTCAGTACATGCCCAAATTCAGATTGATTCTACTCATCCACCACCTATTGTTTTGAGGCTGGCTCGAGAAAATGAAGCCTCTTTTACACTTTTTTTGTTGTTCCTCATTGGATTTGGCATTTAAAGATAGTCATGTTTGCAACGTGTGGAATAATATCCATGCGAATCCTACACATTGCAGACAACTCAGCATTTCATATTTTGTTGATTTGTGTTATCTTCATGCGTGGACAGCTTTACGTTCTCATCTTGGTTATGATCAAAGCTGCTCAACAGGAGTTGAGAGACTATTGATGCGGATGGTTTCCAATTTCTTACCCATCTATTTCAGTTTTCTGTTTCCTTAATGGTTGATTTTGGTGCAGTTGCTTTTGATCGTGTGATTGCGGTTTATTTTTCACTGAACTAGATGCCCGTTACTTATTAGGTTTTACTATTTTAAGGGTTATAAAGTTGTGGCCGAATTTTCTATTTGGTCTTGCAAAAATAGCATGATTTTTTTTTTTCATTTGGTAACTTATTTAGTATTTTGTAAATTCCTTTATCCATTCTTA

Coding sequences of Glyma15g02720

Limit To All Plant Sequences

>Glyma15g02720.1   sequence type=CDS   gene model=Glyma15g02720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCAAGACACCGTGTTCACAGAGAACCCTTGAATGCTCGAAGGGGTTACCCACCGGAAGGGCCATATGCTCGGGTGGCTCCCATGCCTCGACCACTGCCTCCTATTCCTCCTCATCCGTCTGTGTTGGAAGAGGAACTTGAATTTCAGCATGCCGAGATGCGAAGGCTCGTGGCAGACAACAGGAGGTTGATTGATGACCGAATGGCGTTGCAGCGAGACCTTGGGGCCGCTAAGGAGGAGCTTCATCGCATGAATCTTGCCATTGGTGACATTCGCGCCGAGCATGAGGCGCATTCGAGGGAGCTTGTTGAGAAAGGCATGAAGATGGAGGCTGACCTTAGGGCAAATGAGCCTTTGAAGAATGAGGTCATGCAACTGCGATCTGAAGTTAAGAAACTTAACAATCTCAAACAAGAACTGACAGGGAAGGTTCAGACACTCACTCAAGATGTTGCAAGGTTACAAGCAGACAATCAACAAATTCCTATGATGAGGGCTAAGATTGATGGCCTGCACCAAGAGCTAATGCATGCCAGAACCATGGTGGATTACGAAAAGAAGGCAAACATGGAGTTCATGGAACAGAGGCAGTCAATGGAGAAAAATTTGGTTTCCATGGCCCGGGAAGTTGAGAAATTACGTGCTGAGCTTGCTAGTGCTGATAGCAGACATTGGGGTGCTGGTATGTCAGGTATGACAGGTGGGCCTTATGGAACAAAATTTGGTAGCCCAGAGGGTTTTCCAGCTCCATATGCAGATGGATATGGCAGTGTTCACCTGGGTGCTGCAGATAAAGGTCCTATGTATGGGGCGGGTGCTGCCTCAAGAAAGGAGCATGAGAAGCCACACATGAATCGTCGTTGA

>Glyma15g02720.2   sequence type=CDS   gene model=Glyma15g02720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCAAGACACCGTGTTCACAGAGAACCCTTGAATGCTCGAAGGGGTTACCCACCGGAAGGGCCATATGCTCGGGTGGCTCCCATGCCTCGACCACTGCCTCCTATTCCTCCTCATCCGTCTGTGTTGGAAGAGGAACTTGAATTTCAGCATGCCGAGATGCGAAGGCTCGTGGCAGACAACAGGAGGTTGATTGATGACCGAATGGCGTTGCAGCGAGACCTTGGGGCCGCTAAGGAGGAGCTTCATCGCATGAATCTTGCCATTGGTGACATTCGCGCCGAGCATGAGGCGCATTCGAGGGAGCTTGTTGAGAAAGGCATGAAGATGGAGGCTGACCTTAGGGCAAATGAGCCTTTGAAGAATGAGGTCATGCAACTGCGATCTGAAGTTAAGAAACTTAACAATCTCAAACAAGAACTGACAGGGAAGGTTCAGACACTCACTCAAGATGTTGCAAGGTTACAAGCAGACAATCAACAAATTCCTATGATGAGGGCTAAGATTGATGGCCTGCACCAAGAGCTAATGCATGCCAGAACCATGGTGGATTACGAAAAGAAGGCAAACATGGAGTTCATGGAACAGAGGCAGTCAATGGAGAAAAATTTGGTTTCCATGGCCCGGGAAGTTGAGAAATTACGTGCTGAGCTTGCTAGTGCTGATAGCAGACATTGGGGTGCTGGTATGTCAGGTATGACAGGTGGGCCTTATGGAACAAAATTTGGTAGCCCAGAGGGTTTTCCAGCTCCATATGCAGATGGATATGGCAGTGTTCACCTGGGTGCTGCAGATAAAGGTCCTATGTATGGGGCGGGTGCTGCCTCAAGAAAGGAGCATGAGAAGCCACACATGAATCGTCGTTGA

>Glyma15g02720.3   sequence type=CDS   gene model=Glyma15g02720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCAAGACACCGTGTTCACAGAGAACCCTTGAATGCTCGAAGGGGTTACCCACCGGAAGGGCCATATGCTCGGGTGGCTCCCATGCCTCGACCACTGCCTCCTATTCCTCCTCATCCGTCTGTGTTGGAAGAGGAACTTGAATTTCAGCATGCCGAGATGCGAAGGCTCGTGGCAGACAACAGGAGGTTGATTGATGACCGAATGGCGTTGCAGCGAGACCTTGGGGCCGCTAAGGAGGAGCTTCATCGCATGAATCTTGCCATTGGTGACATTCGCGCCGAGCATGAGGCGCATTCGAGGGAGCTTGTTGAGAAAGGCATGAAGATGGAGGCTGACCTTAGGGCAAATGAGCCTTTGAAGAATGAGGTCATGCAACTGCGATCTGAAGTTAAGAAACTTAACAATCTCAAACAAGAACTGACAGGGAAGGTTCAGACACTCACTCAAGATGTTGCAAGGTTACAAGCAGACAATCAACAAATTCCTATGATGAGGGCTAAGATTGATGGCCTGCACCAAGAGCTAATGCATGCCAGAACCATGGTGGATTACGAAAAGAAGGCAAACATGGAGTTCATGGAACAGAGGCAGTCAATGGAGAAAAATTTGGTTTCCATGGCCCGGGAAGTTGAGAAATTACGTGCTGAGCTTGCTAGTGCTGATAGCAGACATTGGGGTGCTGGTATGTCAGGTGGGCCTTATGGAACAAAATTTGGTAGCCCAGAGGGTTTTCCAGCTCCATATGCAGATGGATATGGCAGTGTTCACCTGGGTGCTGCAGATAAAGGTCCTATGTATGGGGCGGGTGCTGCCTCAAGAAAGGAGCATGAGAAGCCACACATGAATCGTCGTTGA

Predicted protein sequences of Glyma15g02720

Limit To All Plant Sequences

>Glyma15g02720.1   sequence type=predicted peptide   gene model=Glyma15g02720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASRHRVHREPLNARRGYPPEGPYARVAPMPRPLPPIPPHPSVLEEELEFQHAEMRRLVADNRRLIDDRMALQRDLGAAKEELHRMNLAIGDIRAEHEAHSRELVEKGMKMEADLRANEPLKNEVMQLRSEVKKLNNLKQELTGKVQTLTQDVARLQADNQQIPMMRAKIDGLHQELMHARTMVDYEKKANMEFMEQRQSMEKNLVSMAREVEKLRAELASADSRHWGAGMSGMTGGPYGTKFGSPEGFPAPYADGYGSVHLGAADKGPMYGAGAASRKEHEKPHMNRR*

>Glyma15g02720.2   sequence type=predicted peptide   gene model=Glyma15g02720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASRHRVHREPLNARRGYPPEGPYARVAPMPRPLPPIPPHPSVLEEELEFQHAEMRRLVADNRRLIDDRMALQRDLGAAKEELHRMNLAIGDIRAEHEAHSRELVEKGMKMEADLRANEPLKNEVMQLRSEVKKLNNLKQELTGKVQTLTQDVARLQADNQQIPMMRAKIDGLHQELMHARTMVDYEKKANMEFMEQRQSMEKNLVSMAREVEKLRAELASADSRHWGAGMSGMTGGPYGTKFGSPEGFPAPYADGYGSVHLGAADKGPMYGAGAASRKEHEKPHMNRR*

>Glyma15g02720.3   sequence type=predicted peptide   gene model=Glyma15g02720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASRHRVHREPLNARRGYPPEGPYARVAPMPRPLPPIPPHPSVLEEELEFQHAEMRRLVADNRRLIDDRMALQRDLGAAKEELHRMNLAIGDIRAEHEAHSRELVEKGMKMEADLRANEPLKNEVMQLRSEVKKLNNLKQELTGKVQTLTQDVARLQADNQQIPMMRAKIDGLHQELMHARTMVDYEKKANMEFMEQRQSMEKNLVSMAREVEKLRAELASADSRHWGAGMSGGPYGTKFGSPEGFPAPYADGYGSVHLGAADKGPMYGAGAASRKEHEKPHMNRR*

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