Report for Sequence Feature Glyma15g02700
Feature Type: gene_model
Chromosome: Gm15
Start: 1847966
stop: 1849096
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g02700
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G55190 AT
Annotation by Michelle Graham. TAIR10: PRA1 (Prenylated rab acceptor) family protein | chr1:20588450-20589019 FORWARD LENGTH=189
SoyBase E_val: 2.00E-74 ISS
GO:0016192 GO-bp
Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport
SoyBase N/A ISS
GO:0005774 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane
SoyBase N/A ISS
GO:0005783 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
KOG3142
KOG
Prenylated rab acceptor 1
JGI ISS
PTHR19317 Panther
PRENYLATED RAB ACCEPTOR 1-RELATED
JGI ISS
PF03208 PFAM
PRA1 family protein
JGI ISS
UniRef100_B7FKD8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: PRA1 family protein F2 n=1 Tax=Medicago truncatula RepID=B7FKD8_MEDTR
SoyBase E_val: 2.00E-73 ISS
UniRef100_C6T2N0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T2N0_SOYBN
SoyBase E_val: 2.00E-126 ISS
Expression Patterns of Glyma15g02700
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma15g02700
Paralog Evidence Comments
Glyma13g42730 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g02700 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g023400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g02700
Coding sequences of Glyma15g02700
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g02700.1 sequence type=CDS gene model=Glyma15g02700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGACCAACTACGGCACAATTCCAACCTCCTCCACACCTTCCACCAACCTCGAGTTCATCTCACGCGCCAAGCAGCGCGTCAAGGAGGGACTCGGAACCCGCCGTCCATGGAAGCTCATGTTCAATTTCCGATCCTTCGCCCTCCCCGCCGGCGTCGGAGACGCCGTCTCGCGCGTGAGGGAGAACATCTCCTACTTCCAGATGAACTACGCGATCGTCGTGCTCATCGTGCTGTTCCTGAGCCTTCTCTGGCATCCAATCTCGCTGATCGTGTTCGTGGTGCTCATGGCGGCGTGGCTCTTCCTCTACTTCCTCCGCGACGAACCGTTAATAATCTTCGGAAGATTAATCAGCGACCGCGTCGTGCTTATCGTCATGGCGGTGCTCACCGTCGTGCTGCTGCTTCTCACCGGCGCCATCGGCAACATCCTCGTGGCGCTGCTCATCGGAGCGGTGTTGGTGGTGGCGCACGCGGCGTTGAGGAAAACCGATGATTTGTTCTTCGACGAGGAAGAGGCCACTCGATTGTCTCCTCCCGGTGCTCCTCTTTCTTGA
Predicted protein sequences of Glyma15g02700
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g02700.1 sequence type=predicted peptide gene model=Glyma15g02700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MTNYGTIPTSSTPSTNLEFISRAKQRVKEGLGTRRPWKLMFNFRSFALPAGVGDAVSRVRENISYFQMNYAIVVLIVLFLSLLWHPISLIVFVVLMAAWLFLYFLRDEPLIIFGRLISDRVVLIVMAVLTVVLLLLTGAIGNILVALLIGAVLVVAHAALRKTDDLFFDEEEATRLSPPGAPLS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
