Report for Sequence Feature Glyma15g02670
Feature Type: gene_model
Chromosome: Gm15
Start: 1815718
stop: 1818177
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g02670
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G17710 AT
Annotation by Michelle Graham. TAIR10: Pyridoxal phosphate phosphatase-related protein | chr1:6090763-6091975 REVERSE LENGTH=279
SoyBase E_val: 8.00E-107 ISS
GO:0008152 GO-bp
Annotation by Michelle Graham. GO Biological Process: metabolic process
SoyBase N/A ISS
GO:0016036 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation
SoyBase N/A ISS
GO:0019375 GO-bp
Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process
SoyBase N/A ISS
GO:0045892 GO-bp
Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0016791 GO-mf
Annotation by Michelle Graham. GO Molecular Function: phosphatase activity
SoyBase N/A ISS
GO:0052731 GO-mf
Annotation by Michelle Graham. GO Molecular Function: phosphocholine phosphatase activity
SoyBase N/A ISS
GO:0052732 GO-mf
Annotation by Michelle Graham. GO Molecular Function: phosphoethanolamine phosphatase activity
SoyBase N/A ISS
KOG3120
KOG
Predicted haloacid dehalogenase-like hydrolase
JGI ISS
PTHR20889 Panther
PHOSPHATASE, ORPHAN 1, 2
JGI ISS
PF06888 PFAM
Putative Phosphatase
JGI ISS
UniRef100_E5D6S8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Acid phosphatase n=1 Tax=Phaseolus vulgaris RepID=E5D6S8_PHAVU
SoyBase E_val: 2.00E-144 ISS
UniRef100_UPI000233B5DF UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233B5DF related cluster n=1 Tax=unknown RepID=UPI000233B5DF
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g02670
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma15g02670
Paralog Evidence Comments
Glyma13g42770 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g02670 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g023100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g02670
Coding sequences of Glyma15g02670
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g02670.2 sequence type=CDS gene model=Glyma15g02670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTGGGAACGTTGTGGTTTTTGACTTCGACTCGACAATCATCGAGTGTGACAGTGATAATTGGGTTCTTGATGAGTTTGGTTTAACTGAAAAGTTCTATCAGCTTCTTCCTAACATGCCTTGGAACCCTCTGATGGATAAGATGATGAATGAACTTCATTCACAAGGAAAAACCATTGAAGACATTGTACAAGTTCTGAACAGGACTCCAATGCATCCCAGCATTGTCCCAGCCATTAAGGCATCATATTCCCTTGGGTGTGAGCTGAAGATTGTGAGCGACGCAAATATATTTTTCATTGAAACAATTTTGAAGCATCATGGGGTGTGGAATTGTTTCTCGGAGGTTATTGCAAACCCCAGTTATGTTAATGAAGAAGGGAGACTCCGAATTTCCCCCTACCATGATTTTCTAAAATGTTCTCATGGATGCAAAAATCCCTGCCCACCAAACATCTGCAAGGGAATGATCATAGAAAGGATCCAAAATTCGGTTGATGCTGCAGGAAAGAAATTCATCTATCTTGGAGATGGAAGTGTAGACTTTTGCCCTAGTTTGAAGCTCAAAGATAGGGATTATCTGATGCCAAGAAAGAATTTTCCATTGTGTGATTTAGTATCTGAAAACTCTAATCTCATAAAGGCAGAGGTACATGCTTGGAGAGATGGGGAAGAACTTTATGATGTTCTGCTCCATTTTATTAACAAAGCTATTGGTGAAGGAAACGGCAGTATTAGTAGTTCTACTCCAATAATATCCGTTGATTGCAAGTTGGAGTTCAATTGA
Predicted protein sequences of Glyma15g02670
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g02670.2 sequence type=predicted peptide gene model=Glyma15g02670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAGNVVVFDFDSTIIECDSDNWVLDEFGLTEKFYQLLPNMPWNPLMDKMMNELHSQGKTIEDIVQVLNRTPMHPSIVPAIKASYSLGCELKIVSDANIFFIETILKHHGVWNCFSEVIANPSYVNEEGRLRISPYHDFLKCSHGCKNPCPPNICKGMIIERIQNSVDAAGKKFIYLGDGSVDFCPSLKLKDRDYLMPRKNFPLCDLVSENSNLIKAEVHAWRDGEELYDVLLHFINKAIGEGNGSISSSTPIISVDCKLEFN*