SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma15g02590): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma15g02590): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma15g02590

Feature Type:gene_model
Chromosome:Gm15
Start:1759559
stop:1761342
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g02590
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G73040AT Annotation by Michelle Graham. TAIR10: Mannose-binding lectin superfamily protein | chr1:27475159-27475777 REVERSE LENGTH=176 SoyBaseE_val: 3.00E-78ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0015996GO-bp Annotation by Michelle Graham. GO Biological Process: chlorophyll catabolic process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR23244Panther KELCH REPEAT DOMAIN JGI ISS
PTHR23244:SF8Panther JASMONATE INDUCIBLE PROTEIN-RELATED JGI ISS
PF01419PFAM Jacalin-like lectin domain JGI ISS
UniRef100_G7IHX4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Agglutinin alpha chain n=1 Tax=Medicago truncatula RepID=G7IHX4_MEDTR SoyBaseE_val: 2.00E-94ISS
UniRef100_I1MCX5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1MCX5_SOYBN SoyBaseE_val: 2.00E-127ISS

Expression Patterns of Glyma15g02590
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g02590 not represented in the dataset
Glyma15g02590 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g02590
ParalogEvidenceComments
Glyma13g42860 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g02590 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma15g02590
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g02590
>Glyma15g02590.1   sequence type=CDS   gene model=Glyma15g02590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGAAAAAGTAGGAAGAGGAGCATAATATTGGGACCATGGGGAGGCAATGGTGGAAATAGCTGGGATGATGGAACCTTCACAGGGGTGAGAGAAATCAAACTAGTTTATGGTCATTGTATAGACTCAATCCAGGTGGTTTATGATAGGAATGGCAAGCCTTTAACAGCTAAAAAACATGGAGGAGTTGGAGGTAACAAAACAGCTGAGATTAAGCTGCAATTCCCAGATGAGTTCTTGGTCAGTGTGAGTGGCCACTACTGTCCAGTTGTTCGTGGAGGCACCCCCGTCATTCTATCATTGACATTCAAGAGCAACCGCAAAACCTTTGGACCCTATGGAGTTGAAGAAGGGACTCCATTCACTTTTTCAATAGATGGAGGCTGTGTTGTGGGTTTTAAGGGGCGAAGTGATTGGTATTTGGATGCAATTGCTTTCACTTTGTGTAATACACGATCAAAGTCGCTGCTTCAGAAGGTTCAGAGGGGCTTGTTCTGGTTAACAAGCACTGCTCCAAAATCTTCATCCTCCAAGGATGGCTAG
Predicted protein sequences of Glyma15g02590
>Glyma15g02590.1   sequence type=predicted peptide   gene model=Glyma15g02590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGKSRKRSIILGPWGGNGGNSWDDGTFTGVREIKLVYGHCIDSIQVVYDRNGKPLTAKKHGGVGGNKTAEIKLQFPDEFLVSVSGHYCPVVRGGTPVILSLTFKSNRKTFGPYGVEEGTPFTFSIDGGCVVGFKGRSDWYLDAIAFTLCNTRSKSLLQKVQRGLFWLTSTAPKSSSSKDG*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo