SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G22720 | AT | Annotation by Michelle Graham. TAIR10: F-box/RNI-like superfamily protein | chr5:7547797-7551174 REVERSE LENGTH=642 | SoyBase | E_val: 2.00E-16 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| PF00646 | PFAM | F-box domain | JGI | ISS | |
| UniRef100_G7IHX4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Agglutinin alpha chain n=1 Tax=Medicago truncatula RepID=G7IHX4_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MCX4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MCX4_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma15g02580 not represented in the dataset |
Glyma15g02580 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g022500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g02580.3 sequence type=transcript gene model=Glyma15g02580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTATAGGCTCTTGAAGTAGCCCAATACAGAGCACACTATATTTTATCTCTCGATTCATTGGTTAGTTCTTTTTTTCTGTCCCTGTCCCTGTCTCTGTCTCTGTCTACTCCGTTTCGAAAACCCTGTGATGACGTAATCTCTGCCATGGTCATGCTTATTGCTTAACGCTTCGCTTTGTTACCTGCAAGCAAATAAACTAATTTAAGATATCTGTATTCTAGGAGTCAAATGATTTCGGGGAGCAAAAGGAAACGCAGCCTAGGGGATAATCTCGACTGTGTTCGAGAGGCTGCTAGGCTGAAAGAAACTCCAGGCGAAAAAGATTCAGATGAAATGGACACAAGTGATGATGGATCCGTGGATCGTATCTCACAATTTCCTGATCATGTCATCCATCACATTCTATCACACCTTCGTAACGTGAACGATGCAATCCGAACCAGTGTTTTGTCCAAGAGATGGAGAGAACTGTGGTATTCTTATTCTGTTTTGATTTTTGATGAAAGAAAGTTTGCTGCAAAAATTGGACATGAAGATAGCAGTAATAAGGGAATGATGTTTAGAGATTATGTATCTAATTCTCTTCTTACCAGCAATGCAAAAAATTTGCAAATACGGAAATTGGTGTTGCACATGACCTCCTTTGACTTATTAGAAGATGCCCCATGTCTGGAACTTTGGCTAAATATTGCTATCTACAGAAACATCAAAGAACTAGATCTCCATGTTGGCATCAAGAATGGCGAGTGCTATACTTTACCACAAACTGTCTTTTCATCCAAAACATTGACTGGCATAAGGTTAAGTGGTTGCAAACTGGGAACTTGCAATAATATAAAGCTTCCTTATCTGCAGAAGCTTTATCTGCGCAAAATTCCCTTGGTTGAGAACTTTATTCAAAATCTTATTTCCTGCTGTCATTCAGTTGAGGATTTAAGAATCATAAAGTGCTCAGGTTTGAAGCATTTGCATGTTTCAAATCTCATTCGACTCAAAAGGGCTGAGATCCACCACTGCATTCAACTGAAGAAGGTTGAGATCAGTGCTCCTAATCTTGACACATTTTGGTATTGTGGCAAGAAAACAAGTCCCTGTAAAGTTAGTTTGGAGGGGTGCACATCTCTGAAAAGGTTGACATTGGAGCATCCCCAAGTGACTCGTGATTTTTGTGAAAATCAGTTCTCCAATTTTCCCTTACTTGAAAAATTGGATTTAAGTATGTCCAATAATAAGAGTAGATTCATTATTATTTCAAATCCTCATCTTGAGAAATTCACTTTGAAAGGATGCAAGAAACTGGGTATTGTTTTAGTAGAGGCTCCTAATCTTTTGTCTTTTGAGTGCAAGGGTGAGACTATGCCCTGGGTTGAGATTCACCCTTTCGGACTCACACAGGCCAAGCTTTCTTTTGTACCTAAATCTGAACCTAGAGTTGTTGGATATGGTGACAAGATTTGGATTAGGATGAAATCATTCATTCAAAAGTTCAATCGTGAACGATTTAAATTGGTTCTCTATTCTAATAAGAGTATTGTTATTCATGAAGATTTGAACAACGTCATATTGCCTCCAGTGCCTGACCTCGGCTGTGAAATTATCAATTCATCAGCATGCATTGATGATGCTTTGAATAGTTTGTTACGGAAATTGCACCCAGTGACTCTATCTATAATTTCTCCCACCGACAGTAAATTCCCCAAGGTATGTTAGTTCTTTTTCTTGTCTTTGTTTCCAATTCATACATACATTCATGTTGAATTTAAATATCTGTCGTCAATGATGAAGCAAAATATTATTACCGCTGGAAGCCTTCTTGAACTGCTTTTGCCATTAACTGGAAAAATGACAATTGCAGTTAGTTTATGAAATGATGAAGAACAAAGACAAGGACCCAATCTGTTGCATATATAGTACTTCCAAGAATAAATGTTGGCGGCATCTCCTGAAGGATGTCAACTTTGAAGACCTAAATGATGTAAAGTTTGAAGACATCGAAGTGAGTGAAGACAGTAGGACTTCTACGTGGTATAATTGGTTGAAGACTGAGTATACAACATTGGAGTGTCAAATTACTAATCTTAGATTGTGCTGGAATTCTCATGAACATGACATGGAGACATGAAAGACTTGTTTACAAATGATTGACAAAAAATTGTTTTAAAGAAAGTTGTGCTGTGGAATTTGTTCGTTTTCTTTTTTCCCCCTTTTTGTTACTATTATATTAAATTATGATACAGTGGATACTTTGTTTGTAGGAAAACAATATACGCTCCATTCTGGACAATTTTTGTGTTCCTGATATTCTAAATTCCATTTGACATCGAATATAACCCGTGAGAATCAGTGATGCCCACAATGGTGGCCA
>Glyma15g02580.2 sequence type=CDS gene model=Glyma15g02580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATTTCGGGGAGCAAAAGGAAACGCAGCCTAGGGGATAATCTCGACTGTGTTCGAGAGGCTGCTAGGCTGAAAGAAACTCCAGGCGAAAAAGATTCAGATGAAATGGACACAAGTGATGATGGATCCGTGGATCGTATCTCACAATTTCCTGATCATGTCATCCATCACATTCTATCACACCTTCGTAACGTGAACGATGCAATCCGAACCAGTGTTTTGTCCAAGAGATGGAGAGAACTGTGGTATTCTTATTCTGTTTTGATTTTTGATGAAAGAAAGTTTGCTGCAAAAATTGGACATGAAGATAGCAGTAATAAGGGAATGATGTTTAGAGATTATGTATCTAATTCTCTTCTTACCAGCAATGCAAAAAATTTGCAAATACGGAAATTGGTGTTGCACATGACCTCCTTTGACTTATTAGAAGATGCCCCATGTCTGGAACTTTGGCTAAATATTGCTATCTACAGAAACATCAAAGAACTAGATCTCCATGTTGGCATCAAGAATGGCGAGTGCTATACTTTACCACAAACTGTCTTTTCATCCAAAACATTGACTGGCATAAGGTTAAGTGGTTGCAAACTGGGAACTTGCAATAATATAAAGCTTCCTTATCTGCAGAAGCTTTATCTGCGCAAAATTCCCTTGGTTGAGAACTTTATTCAAAATCTTATTTCCTGCTGTCATTCAGTTGAGGATTTAAGAATCATAAAGTGCTCAGGTTTGAAGCATTTGCATGTTTCAAATCTCATTCGACTCAAAAGGGCTGAGATCCACCACTGCATTCAACTGAAGAAGGTTGAGATCAGTGCTCCTAATCTTGACACATTTTGGTATTGTGGCAAGAAAACAAGTCCCTGTAAAGTTAGTTTGGAGGGGTGCACATCTCTGAAAAGGTTGACATTGGAGCATCCCCAAGTGACTCGTGATTTTTGTGAAAATCAGTTCTCCAATTTTCCCTTACTTGAAAAATTGGATTTAAGTATGTCCAATAATAAGAGTAGATTCATTATTATTTCAAATCCTCATCTTGAGAAATTCACTTTGAAAGGATGCAAGAAACTGGGTATTGTTTTAGTAGAGGCTCCTAATCTTTTGTCTTTTGAGTGCAAGGGTGAGACTATGCCCTGGGTTGAGATTCACCCTTTCGGACTCACACAGGCCAAGCTTTCTTTTGTACCTAAATCTGAACCTAGAGTTGTTGGATATGGTGACAAGATTTGGATTAGGATGAAATCATTCATTCAAAAGTTCAATCGTGAACGATTTAAATTGGTTCTCTATTCTAATAAGAGTATTGTTATTCATGAAGATTTGAACAACGTCATATTGCCTCCAGTGCCTGACCTCGGCTGTGAAATTATCAATTCATCAGCATGCATTGATGATGCTTTGAATAGTTTGTTACGGAAATTGCACCCAGTGACTCTATCTATAATTTCTCCCACCGACAGTAAATTCCCCAAGTTAGTTTATGAAATGATGAAGAACAAAGACAAGGACCCAATCTGTTGCATATATAGTACTTCCAAGAATAAATGTTGGCGGCATCTCCTGAAGGATGTCAACTTTGAAGACCTAAATGATGTAAAGTTTGAAGACATCGAAGTGAGTGAAGACAGTAGGACTTCTACGTGGTATAATTGGTTGAAGACTGAGTATACAACATTGGAGTGTCAAATTACTAATCTTAGATTGTGCTGGAATTCTCATGAACATGACATGGAGACATGA >Glyma15g02580.3 sequence type=CDS gene model=Glyma15g02580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATTTCGGGGAGCAAAAGGAAACGCAGCCTAGGGGATAATCTCGACTGTGTTCGAGAGGCTGCTAGGCTGAAAGAAACTCCAGGCGAAAAAGATTCAGATGAAATGGACACAAGTGATGATGGATCCGTGGATCGTATCTCACAATTTCCTGATCATGTCATCCATCACATTCTATCACACCTTCGTAACGTGAACGATGCAATCCGAACCAGTGTTTTGTCCAAGAGATGGAGAGAACTGTGGTATTCTTATTCTGTTTTGATTTTTGATGAAAGAAAGTTTGCTGCAAAAATTGGACATGAAGATAGCAGTAATAAGGGAATGATGTTTAGAGATTATGTATCTAATTCTCTTCTTACCAGCAATGCAAAAAATTTGCAAATACGGAAATTGGTGTTGCACATGACCTCCTTTGACTTATTAGAAGATGCCCCATGTCTGGAACTTTGGCTAAATATTGCTATCTACAGAAACATCAAAGAACTAGATCTCCATGTTGGCATCAAGAATGGCGAGTGCTATACTTTACCACAAACTGTCTTTTCATCCAAAACATTGACTGGCATAAGGTTAAGTGGTTGCAAACTGGGAACTTGCAATAATATAAAGCTTCCTTATCTGCAGAAGCTTTATCTGCGCAAAATTCCCTTGGTTGAGAACTTTATTCAAAATCTTATTTCCTGCTGTCATTCAGTTGAGGATTTAAGAATCATAAAGTGCTCAGGTTTGAAGCATTTGCATGTTTCAAATCTCATTCGACTCAAAAGGGCTGAGATCCACCACTGCATTCAACTGAAGAAGGTTGAGATCAGTGCTCCTAATCTTGACACATTTTGGTATTGTGGCAAGAAAACAAGTCCCTGTAAAGTTAGTTTGGAGGGGTGCACATCTCTGAAAAGGTTGACATTGGAGCATCCCCAAGTGACTCGTGATTTTTGTGAAAATCAGTTCTCCAATTTTCCCTTACTTGAAAAATTGGATTTAAGTATGTCCAATAATAAGAGTAGATTCATTATTATTTCAAATCCTCATCTTGAGAAATTCACTTTGAAAGGATGCAAGAAACTGGGTATTGTTTTAGTAGAGGCTCCTAATCTTTTGTCTTTTGAGTGCAAGGGTGAGACTATGCCCTGGGTTGAGATTCACCCTTTCGGACTCACACAGGCCAAGCTTTCTTTTGTACCTAAATCTGAACCTAGAGTTGTTGGATATGGTGACAAGATTTGGATTAGGATGAAATCATTCATTCAAAAGTTCAATCGTGAACGATTTAAATTGGTTCTCTATTCTAATAAGAGTATTGTTATTCATGAAGATTTGAACAACGTCATATTGCCTCCAGTGCCTGACCTCGGCTGTGAAATTATCAATTCATCAGCATGCATTGATGATGCTTTGAATAGTTTGTTACGGAAATTGCACCCAGTGACTCTATCTATAATTTCTCCCACCGACAGTAAATTCCCCAAGGTATGTTAG
>Glyma15g02580.2 sequence type=predicted peptide gene model=Glyma15g02580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MISGSKRKRSLGDNLDCVREAARLKETPGEKDSDEMDTSDDGSVDRISQFPDHVIHHILSHLRNVNDAIRTSVLSKRWRELWYSYSVLIFDERKFAAKIGHEDSSNKGMMFRDYVSNSLLTSNAKNLQIRKLVLHMTSFDLLEDAPCLELWLNIAIYRNIKELDLHVGIKNGECYTLPQTVFSSKTLTGIRLSGCKLGTCNNIKLPYLQKLYLRKIPLVENFIQNLISCCHSVEDLRIIKCSGLKHLHVSNLIRLKRAEIHHCIQLKKVEISAPNLDTFWYCGKKTSPCKVSLEGCTSLKRLTLEHPQVTRDFCENQFSNFPLLEKLDLSMSNNKSRFIIISNPHLEKFTLKGCKKLGIVLVEAPNLLSFECKGETMPWVEIHPFGLTQAKLSFVPKSEPRVVGYGDKIWIRMKSFIQKFNRERFKLVLYSNKSIVIHEDLNNVILPPVPDLGCEIINSSACIDDALNSLLRKLHPVTLSIISPTDSKFPKLVYEMMKNKDKDPICCIYSTSKNKCWRHLLKDVNFEDLNDVKFEDIEVSEDSRTSTWYNWLKTEYTTLECQITNLRLCWNSHEHDMET* >Glyma15g02580.3 sequence type=predicted peptide gene model=Glyma15g02580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MISGSKRKRSLGDNLDCVREAARLKETPGEKDSDEMDTSDDGSVDRISQFPDHVIHHILSHLRNVNDAIRTSVLSKRWRELWYSYSVLIFDERKFAAKIGHEDSSNKGMMFRDYVSNSLLTSNAKNLQIRKLVLHMTSFDLLEDAPCLELWLNIAIYRNIKELDLHVGIKNGECYTLPQTVFSSKTLTGIRLSGCKLGTCNNIKLPYLQKLYLRKIPLVENFIQNLISCCHSVEDLRIIKCSGLKHLHVSNLIRLKRAEIHHCIQLKKVEISAPNLDTFWYCGKKTSPCKVSLEGCTSLKRLTLEHPQVTRDFCENQFSNFPLLEKLDLSMSNNKSRFIIISNPHLEKFTLKGCKKLGIVLVEAPNLLSFECKGETMPWVEIHPFGLTQAKLSFVPKSEPRVVGYGDKIWIRMKSFIQKFNRERFKLVLYSNKSIVIHEDLNNVILPPVPDLGCEIINSSACIDDALNSLLRKLHPVTLSIISPTDSKFPKVC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
