Glyma15g02560 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma15g02560

Feature Type:	gene_model
Chromosome:	Gm15
Start:	1750229
stop:	1753667
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g02560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G51760	AT	Annotation by Michelle Graham. TAIR10: peptidase M20/M25/M40 family protein \| chr1:19199562-19201424 FORWARD LENGTH=440	SoyBase	E_val: 0	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0008237	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metallopeptidase activity	SoyBase	N/A	ISS
GO:0010179	GO-mf	Annotation by Michelle Graham. GO Molecular Function: IAA-Ala conjugate hydrolase activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
PTHR11014	Panther	PROTEASE M20-RELATED	JGI		ISS
PTHR11014:SF41	Panther		JGI		ISS
PF01546	PFAM	Peptidase family M20/M25/M40	JGI		ISS
PF07687	PFAM	Peptidase dimerisation domain	JGI		ISS
UniRef100_I1MCX3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MCX3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q0GXX6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin conjugate hydrolase n=1 Tax=Medicago truncatula RepID=Q0GXX6_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g02560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g02560

Paralog	Evidence	Comments
Glyma13g42880	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g02560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g022300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g02560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g02560

Limit To All Plant Sequences

>Glyma15g02560.1   sequence type=CDS   gene model=Glyma15g02560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTTTTTCTTCAAATGGGTCAACTTGTTTGTCTTTTTTCATTTCCTTGCTGCAACACCCATCTTCTCAGATTCCTCCTCCAGCTCAAATGCATTCGTCACCACCAAGTTCCTAGATTTAGCCAAGGATCCTCTGGTATTTGATTGGATGATTGGTATCAGGAGGAAGATTCATGAGAATCCAGAACTGGGTTATGAGGAATTTGAGACCAGTAAGCTGATAAGAACTGAATTGGATAAACTGGGCATCTCATATAAATACCCAGTTGCAGTCACTGGTGTTGTTGGCTTCATAGGGACTGGACTCCCTCCTTTTGTTGCATTAAGAGCTGACATGGATGCTCTTCCTCTGCAGGAAATGGTGGAGTGGGAGCACAAGAGTAAAGTACCTGGAAAGATGCATGCATGCGGTCATGATGCTCATGTTGCCATGCTTCTCGGTGCTGCAAAGATCCTCAAACGGCATGAAAATGAGATACGAGGAACTGTTGTTCTTGTTTTTCAACCAGCAGAAGAAGGAGGTGGAGGGGCTAAGAAAATTTTAGATGCTGGAGTCTTGGAAAATATCTCTGCCATATTTGGATTGCATATTGTACCTACCTATCCTATTGGTGAAGTGGCCTCAAGGTCGGGTCCCATATTTGCTGGAAGCGGCTTCTTTGAAGCAACAATAAATGGCAGGGGAGGCCATGCAGCTATCCCTCAGCACTCTATAGATCCAATATTGGCTGCTTCCAATGTGATTGTTAGCTTACAGCATATTGTTTCTCGTGAGGTTGATCCTCTGGACTCCCAGGTTGTGACTGTAGGAAAGTTTCAAGGAGGTGGTGCTTTCAATGTTATTCCAGACTCTGTCACAATTGGTGGCACCTTCCGAGCTTTTTCAAAAGAAAGCTTCATGCAACTGAGACAGCGGATTGAGCAGGTTATCACTGGTCAAGCCGCTGTGCAGAGATGCAATGCAACGGTCAACTTTCTTGATGATGAGAAACCTTTCTCCCCCCCTACAGTAAACAACGGGGACTTGCATGGGTACTTTGAAAGTGTTGCTGGGAGTTTGCTTGGCGTGAATAATGTCAAGGAGATGCAACCATTGATGGGATCTGAGGACTTTGCATTCTATCAAGAGGTTTTTCCGGGATACTTCTTCCTCCTTGGAATGGATAATGCCTCTAATGAACATCTTGAATCTCCACACTCTCCATATTTCAAAATCAATGAAGATGCACTTCCTTATGGAGCTGCACTTCATGTATCATTAGCAAGTAGTTATCTTCTCAAATTAAATCCGGACATATCAGTAGTGGGGGGGAAACATCACGATGAATTATAA

Predicted protein sequences of Glyma15g02560

Limit To All Plant Sequences

>Glyma15g02560.1   sequence type=predicted peptide   gene model=Glyma15g02560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGFFFKWVNLFVFFHFLAATPIFSDSSSSSNAFVTTKFLDLAKDPLVFDWMIGIRRKIHENPELGYEEFETSKLIRTELDKLGISYKYPVAVTGVVGFIGTGLPPFVALRADMDALPLQEMVEWEHKSKVPGKMHACGHDAHVAMLLGAAKILKRHENEIRGTVVLVFQPAEEGGGGAKKILDAGVLENISAIFGLHIVPTYPIGEVASRSGPIFAGSGFFEATINGRGGHAAIPQHSIDPILAASNVIVSLQHIVSREVDPLDSQVVTVGKFQGGGAFNVIPDSVTIGGTFRAFSKESFMQLRQRIEQVITGQAAVQRCNATVNFLDDEKPFSPPTVNNGDLHGYFESVAGSLLGVNNVKEMQPLMGSEDFAFYQEVFPGYFFLLGMDNASNEHLESPHSPYFKINEDALPYGAALHVSLASSYLLKLNPDISVVGGKHHDEL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain