Glyma15g02490 - SoyBase

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Report for Sequence Feature Glyma15g02490

Feature Type:	gene_model
Chromosome:	Gm15
Start:	1682407
stop:	1690185
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g02490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G51800	AT	Annotation by Michelle Graham. TAIR10: Leucine-rich repeat protein kinase family protein \| chr1:19214203-19217833 FORWARD LENGTH=894	SoyBase	E_val: 0	ISS
GO:0002679	GO-bp	Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0006569	GO-bp	Annotation by Michelle Graham. GO Biological Process: tryptophan catabolic process	SoyBase	N/A	ISS
GO:0006857	GO-bp	Annotation by Michelle Graham. GO Biological Process: oligopeptide transport	SoyBase	N/A	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0009684	GO-bp	Annotation by Michelle Graham. GO Biological Process: indoleacetic acid biosynthetic process	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0015824	GO-bp	Annotation by Michelle Graham. GO Biological Process: proline transport	SoyBase	N/A	ISS
GO:0050832	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF417	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
UniRef100_C6ZRU0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Stress-induced receptor-like kinase n=1 Tax=Glycine max RepID=C6ZRU0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_C6ZRU0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Stress-induced receptor-like kinase n=1 Tax=Glycine max RepID=C6ZRU0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g02490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g02490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g021700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g02490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g02490

Limit To All Plant Sequences

>Glyma15g02490.2   sequence type=CDS   gene model=Glyma15g02490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGAATGTCCAGGAGTTTCCTAGTTGCTTTTCTAGGATGTCTACTTCTTGCCGTTCCAATTCAAGCTCAGGATCAATCAGGATTCCTCAGCATAGCTTGCGGAGCTCCTGCAGGTGTGAACTTTACTGTGCCGATAACAGGCTTAAACTATACATCAGATGCAAATTTCATAAATACTGGTGTGAAGAGCACAATAGTATCTGAACTCAGAGATCAGTTTCAAAGACACGTGTGGAATCTCAGAAGCTTCCCGGAAGGAAAAAGGAACTGCTACAAAATAAACATCACAAGAGGCTCCAAGTATCTGATCAGGGCTTCTTTTTTGTACGGAAATTATGATGGCTTAAATATGTTACCACAGTTTGATCTTCTTCTCGGGGCTAACCGGTGGCGTACAGTGAACATAAAAAATGCATCCGTTAGCCGACATTTTGAGATCATATATGTACCTTCACTGGATTACGTACATATCTGTATGGTTGACACAGGCCTTGGTACACCATTTATATCAGCTATAGAGTTGAGGTCTTTGAGAAATGACATTTATGAAACTGAATTTGGATCATTGGAAAAGTACATCCGTCGGGATTTAGGTTCAAACAAAGGCTACAGGTACGACGATGATGTTTATGATCGTTACTGGAACTATGACGATGCAGATACATGGTATGACAATGTAGATAAATGGAAACAGCTAAATTTTCCGATTGATGCTGATTCTTTAGTGCAGAAACAGTACCAACCGCCAGCTGTTGTCATGAGCACCGCAGTTACACCAGCAAATGTTAGTGCTCCATTGGTAATAAGCTGGGAGCCATATGATCCAAAAGATTCATTCTATGTATACATGCACTTCACAGAGATTCAAGTGTTAGCAAAGAATCAGACGAGAGAGTTCAACATCACCCTGAACGGAAAGCTATGGTATGAAAATGAGTCTCCTAGGTACCACAGTGTCGATACTATATATACCCCTTCAGGCATCAGTGGGAAATTAATTAATTTTTCATTTGTGATGACCGAGACTTCTACCCTACCTCCCATCATCAATGCCATTGAAATTTACAGAGTGAAAGAGTTCCCGCAACAAGACACATACCAAGGAGATGTTGATGCGATTACAACCATCAAGTCTGTTTATGGGGTGACAAGAGATTGGCAAGGTGATCCATGCAGCCCGAAAGACTACTTGTGGGAGGGTCTGAATTGTACGTATCCCGTAATTGACTCCCCAAGAATCATAACTTTGAACTTATCTTCAAGTGGATTGTCAGGAAAGATAGACCCTTCAATTTTAAATCTCACCAAGTTGGAGAAATTGGATTTATCAAACAATAGCTTAAACGGTGAAGTTCCGGATTTTCTGTCTCAATTACAATACTTGAAGATCTTGAACTTGGAGAATAATAACCTCTCCGGTTCAATTCCCTCAACACTTGTTGAAAAATCTAAGGAAGGTTCCCTATCACTAAGTGTGAGCCAAAATCCATATCTCTGTGAATCTGGTCAATGCAATTTCGAGAAGAAACAAAAGAACATTGTTACGCCGCCCATAGTACCATCAATTAGTGGGGCGTTGATTCTTATAGTAGCCGTTGCAATATTGTGGACCCTTAAAAGGAGAAAATCAAAAGAAAAATCAACAGCTTTGATGGAAGTGAATGATGAAAGTGAGATCTTACGCCTGCGATCCACAAAAAAAGATGATTCATTAGCGCAAGTCAAAAAACAAATATATTCATACTCTGACGTCCTTAAAATCACCAACAATTTCAATACAATTATTGGTAAAGGAGGATTTGGAACAGTTTACCTGGGCTATATCGATGACAGTCCAGTTGCAGTGAAAGTGCTTTCTCCATCGGCTGTACATGGCTTTCAACAATTTCAAGCAGAGGTTAAACTTCTAATCAGAGTTCATCACAAAAACTTAACATCCCTTATTGGTTATTGCAATGAAGGAACCAATAAGGCTCTCATATATGAGTATATGGCTAATGGGAACTTACAAGAACATCTCTCTGGTAAACACAGCAAATCAACGTTCTTGAGCTGGGAGGACAGACTTCGTATAGCAGTGGATGCAGCCTTAGGATTGGAGTATCTGCAAAATGGTTGCAAGCCTCCAATAATCCACAGAGATGTAAAATCTACAAACATCTTGTTGAATGAACACTTCCAAGCAAAATTGTCAGATTTTGGTCTATCCAAAGCTATCCCAATTGATGGGGAATCTCACGTGTCAACTGTCGTTGCTGGTACTCCTGGTTATCTGGACCCTCACTACCACAAATTCAGTAGATTAACACAGAAAAGCGATGTTTTTAGCTTTGGAGTTGTTCTTTTGGAAATAATCACAAACCAACCAGTAATGGAAAGGAATCAAGAAAAGGGTCACATAAGTGGAAGGGTTAGGTCCTTGATTGAGAAAGGGGATATCAGGGCCATAGTTGACTCAAGGTTAGAAGGAGATTATGACATTAACTCAGCTTGGAAAGCCTTAGAAATAGCAATGGCTTGTGTTTCTCAAAATCCCAACGAAAGGCCAATCATGAGTGAGATTGCTATTGAACTAAAGGAGACATTAGCGATCGAAGAATTAGCTCGAGCAAAACATTGTGATGCCAATCCCAGACATTTAGTTGAAGCGGTTAGCGTGAATGTGGACACCGAATTCATGCCCCTGGCGAGGTAG

Predicted protein sequences of Glyma15g02490

Limit To All Plant Sequences

>Glyma15g02490.2   sequence type=predicted peptide   gene model=Glyma15g02490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRMSRSFLVAFLGCLLLAVPIQAQDQSGFLSIACGAPAGVNFTVPITGLNYTSDANFINTGVKSTIVSELRDQFQRHVWNLRSFPEGKRNCYKINITRGSKYLIRASFLYGNYDGLNMLPQFDLLLGANRWRTVNIKNASVSRHFEIIYVPSLDYVHICMVDTGLGTPFISAIELRSLRNDIYETEFGSLEKYIRRDLGSNKGYRYDDDVYDRYWNYDDADTWYDNVDKWKQLNFPIDADSLVQKQYQPPAVVMSTAVTPANVSAPLVISWEPYDPKDSFYVYMHFTEIQVLAKNQTREFNITLNGKLWYENESPRYHSVDTIYTPSGISGKLINFSFVMTETSTLPPIINAIEIYRVKEFPQQDTYQGDVDAITTIKSVYGVTRDWQGDPCSPKDYLWEGLNCTYPVIDSPRIITLNLSSSGLSGKIDPSILNLTKLEKLDLSNNSLNGEVPDFLSQLQYLKILNLENNNLSGSIPSTLVEKSKEGSLSLSVSQNPYLCESGQCNFEKKQKNIVTPPIVPSISGALILIVAVAILWTLKRRKSKEKSTALMEVNDESEILRLRSTKKDDSLAQVKKQIYSYSDVLKITNNFNTIIGKGGFGTVYLGYIDDSPVAVKVLSPSAVHGFQQFQAEVKLLIRVHHKNLTSLIGYCNEGTNKALIYEYMANGNLQEHLSGKHSKSTFLSWEDRLRIAVDAALGLEYLQNGCKPPIIHRDVKSTNILLNEHFQAKLSDFGLSKAIPIDGESHVSTVVAGTPGYLDPHYHKFSRLTQKSDVFSFGVVLLEIITNQPVMERNQEKGHISGRVRSLIEKGDIRAIVDSRLEGDYDINSAWKALEIAMACVSQNPNERPIMSEIAIELKETLAIEELARAKHCDANPRHLVEAVSVNVDTEFMPLAR*

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