SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma15g02380): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma15g02380): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma15g02380

Feature Type:gene_model
Chromosome:Gm15
Start:1603594
stop:1605499
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g02380
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G29340AT Annotation by Michelle Graham. TAIR10: profilin 4 | chr4:14447718-14448467 FORWARD LENGTH=134 SoyBaseE_val: 9.00E-72ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0007010GO-bp Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization SoyBaseN/AISS
GO:0007015GO-bp Annotation by Michelle Graham. GO Biological Process: actin filament organization SoyBaseN/AISS
GO:0009408GO-bp Annotation by Michelle Graham. GO Biological Process: response to heat SoyBaseN/AISS
GO:0009644GO-bp Annotation by Michelle Graham. GO Biological Process: response to high light intensity SoyBaseN/AISS
GO:0030036GO-bp Annotation by Michelle Graham. GO Biological Process: actin cytoskeleton organization SoyBaseN/AISS
GO:0042542GO-bp Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0015629GO-cc Annotation by Michelle Graham. GO Cellular Compartment: actin cytoskeleton SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0003779GO-mf Annotation by Michelle Graham. GO Molecular Function: actin binding SoyBaseN/AISS
KOG1755 KOG Profilin JGI ISS
PTHR11604Panther PROFILIN JGI ISS
PF00235PFAM Profilin JGI ISS
UniRef100_I1MCV8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Profilin n=1 Tax=Glycine max RepID=I1MCV8_SOYBN SoyBaseE_val: 7.00E-91ISS
UniRef100_I1MCV8UniRef Annotation by Michelle Graham. Best UniRef hit: Profilin n=1 Tax=Glycine max RepID=I1MCV8_SOYBN SoyBaseE_val: 7.00E-91ISS

Expression Patterns of Glyma15g02380
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g02380 not represented in the dataset
Glyma15g02380 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g02380 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g020700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g02380
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g02380
>Glyma15g02380.1   sequence type=CDS   gene model=Glyma15g02380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTGGCAAAGCTACGTGGATGACCACCTCATGTGCGATTTCGATGGCCACGCCCTCGCGGCTGCCGCCATCATCGGCCACGACGGCACTGTCTGGGCACAAAGCTCCAAATTTCCTCAGTTTAAGGGTGAAGAAATTGTAGCCATCATGAAAGATTTTGACGAACCTGGCAGCCTTGCTCCAACGGGCTTGCACCTCGGTGATACTAAGTACATGGTCATCCAAGGTGAACCTGGAGCTGTTATTCGCGGCAAGAAGGGTGCTGGTGGGGTCACTGTTAAAAAAACTACTCAAGCTCTGGTAATTGGTATCTATGAGGAACCTCTGACCCCAGGACAGTGCAACATGATCGTTGAGAGGTTGGGAGATTATTTGGTTGAGCTGGGGCTCTAG
Predicted protein sequences of Glyma15g02380
>Glyma15g02380.1   sequence type=predicted peptide   gene model=Glyma15g02380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSWQSYVDDHLMCDFDGHALAAAAIIGHDGTVWAQSSKFPQFKGEEIVAIMKDFDEPGSLAPTGLHLGDTKYMVIQGEPGAVIRGKKGAGGVTVKKTTQALVIGIYEEPLTPGQCNMIVERLGDYLVELGL*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo