Glyma15g02350 - SoyBase

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Report for Sequence Feature Glyma15g02350

Feature Type:	gene_model
Chromosome:	Gm15
Start:	1573377
stop:	1577676
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g02350

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G16500	AT	Annotation by Michelle Graham. TAIR10: phytochrome-associated protein 1 \| chr3:5612801-5614208 REVERSE LENGTH=269	SoyBase	E_val: 1.00E-85	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006995	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to nitrogen starvation	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
PF02309	PFAM	AUX/IAA family	JGI		ISS
UniRef100_D9ZIM7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ARF domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZIM7_MALDO	SoyBase	E_val: 5.00E-117	ISS
UniRef100_I1MCV5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MCV5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g02350

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g02350

Paralog	Evidence	Comments
Glyma13g43050	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g02350 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g020300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g02350

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g02350

Limit To All Plant Sequences

>Glyma15g02350.3   sequence type=transcript   gene model=Glyma15g02350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGATCACTCAGCACTACTACGTGCACTTGTTAATCATATTAAAATTTAAATATTAATTAAACGAATACGAGTACATAAAGTATGCACCTCCACAAAATCATTAGAAGTTAAGCTGTTCACTTTATAAAACGGAAATCAAACTGGTGATACGTGTGTATCTTAAAGTTATAACTCATAAGACTCATAACCATGACTAATTTTTAGTTTCATAATAAGTGATAGGTACAGTGATTCATGTGAGGATACACTGTTATACACAAGTGATAGTGGAAAATGAGACTTAGAAGATTGTAAAACTGTATATAGTTTAGGAATAGTGGTGTCCAAATTTGATAATTATGCAGTAGGGTAAGATGCAATCATAGCTATGTCACAGAGTCCTTCCTCAGATTTTACAGCTGCTTTACTTCCTGTTCTAAACAACCTAACGTTATTTTTATGAGACTTGAGGTTGCGTGCATTGTGCTCTAATTCCGTTCCTGTTTTGTGTTCTTGGGTTGGTTGGCCAAGGGGAATCTCTCTGGTTTTTATCACACCTCTGTCTCTTTTTTTTTTAACCTCTCTCCTTAAAAAGAGGAAAGACATAGATAGAGAGAGATAGAGAGAGAAAGAGAGCAGGAGAACCCACTAAGCGTGCAAATAAAAGACTTAAAGCAAAGCTAAGATTACAATCCCATGCTATTATAGCTCCCTCCACCTTTGCTTTGCTTTTCGGGTGTGTTTTTATTTTTTATTTTCTCTTCCTTTCTCTCTTGGTGGGGTTTCCATTGAGCTGTGATAATACTTGTGTGTTCCTCCTTCTGCTACCTCAGTCTATCCAACGTTTTGCAGTGGCCAAAACCTTAAAACCCTTTTATTTTTAAGGTTTCCTCTGTAGGTCCTTCTTGCTGTTCGCTCAGACTCTCGCACTTGTTGCAAGGAAGCCCTTGTTTCTCACAACTACAAGATGTGGTATTTATCGGATTTAAGCTGCGGTTAGACTTTGGGGGATTCTAGAGTTTGTTTTTGTTTCTTGCATACATATATTTGGTGAGTGATATTTCAGCAAGGAGGAATCTTCCTTTGGAGCGTGGTGTGAACAGAAGATGGATGAAAGGTCAAGAAACGAGGCATCTCCTCAGCTGTTAGATTTGATCTCAAACGAGAGAGAGTGGCAGATGAACAAGAGAAACGAAGGAAAATCCTCAGAAGAAAGAAAGCTTGAACTGAGGCTTGGTCCACCTGGTGAAGACTGGTCTCTGGGCGGTAAAATGAAGAACACAGAAAGAGAAGAATCTCTTCTCTCTCTTGGTTGCTTCTCTCCTAACAATGGGTTCCAGAGCAAGGCTTCTCCATGGCCAAACTACCACCACCACCACCAGGGTAACAACAACAAAGCCTCTTCTTCATCATTTCTTCAGTGCCCTAAGGTTGTGGTAGAGTTGCAGAATGGTGGTGATGGCAAAGTATTCTCTCCCTCTTCTGCAAATACAGCTGTGTCCCAGCCCAACACCTCTCAGAAAAGAACTGCTCCTGCTCCAGTGGTGGGGTGGCCCCCAATTCGTTCCTTCAGGAAGAACCTTGCAAGCAGCAGCAGTGCTTCTAAGCCACCTCCTGAGTCTCAGGCTGAGCAGCACAACAAGGTTGCTGGTAAAAAACCTGTTGACAACTATGCTAATAATAAAGGTTTGTTTGTCAAGATCAACATGGATGGTGTTCCTATAGGGAGAAAAGTGGACCTCAATGCCTATGACAGCTATGAAAATCTCTCTTCCGCCGTGGACGAGCTATTCAGAGGTCTTCTTGCTGCTCAAAGAGATTCCTCTGCTGGTGGAGTTCACAACAAGCAGGAGGAAGAGAAAGCAATTACGGGGTTATTGGATGGAAGTGGAGAGTATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCACATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACCCTTGGGAGTAAGCAAGACAAGATACCCCTTGACTCAGCAATGAAATGAACAGCGGTTTGAGGTTTTGATCACCTGCTGAAAACTTGAAGACTCTTCCTAATTTGACGTTTTGGTTCTATTGTCTGATGAAAAGAACATGGAATGAAGCTAGTTGCGTACATTACAACTAAGTAATGTGATGAATGTGTCTTTTTTTTTTTTTTTTCTAAATGAAGATTTGAAATGTTTATGGGTTTTGTATAAATAGGGAAGGGAAACTTCACGGATGTGTGTACTTATGATTTACTGTTGAGTAGCCATTAACTTGTTTTGGTTTGTATTTTGAAGTCCCTTTTGTAGGTGGGGTTTTTCAGGGTCTTAATAATTTTCACATCGTCATGGCAAAGAGCGAAATTTGGGACCTGTAAAAATATGGCTTTACTTGCTGGAATATTTTTCTCCCAAAATCTTGTGATTTTAAACTTTTTAACAAGATTTATGATGCAAATCTCTCAACTTAAGAG

Coding sequences of Glyma15g02350

Limit To All Plant Sequences

>Glyma15g02350.1   sequence type=CDS   gene model=Glyma15g02350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGAAAGGTCAAGAAACGAGGCATCTCCTCAGCTGTTAGATTTGATCTCAAACGAGAGAGAGTGGCAGATGAACAAGAGAAACGAAGGAAAATCCTCAGAAGAAAGAAAGCTTGAACTGAGGCTTGGTCCACCTGGTGAAGACTGGTCTCTGGGCGGTAAAATGAAGAACACAGAAAGAGAAGAATCTCTTCTCTCTCTTGGTTGCTTCTCTCCTAACAATGGGTTCCAGAGCAAGGCTTCTCCATGGCCAAACTACCACCACCACCACCAGGGTAACAACAACAAAGCCTCTTCTTCATCATTTCTTCAGTGCCCTAAGGTTGTGGTAGAGTTGCAGAATGGTGGTGATGGCAAAGTATTCTCTCCCTCTTCTGCAAATACAGCTGTGTCCCAGCCCAACACCTCTCAGAAAAGAACTGCTCCTGCTCCAGTGGTGGGGTGGCCCCCAATTCGTTCCTTCAGGAAGAACCTTGCAAGCAGCAGCAGTGCTTCTAAGCCACCTCCTGAGTCTCAGGCTGAGCAGCACAACAAGGTTGCTGGTAAAAAACCTGTTGACAACTATGCTAATAATAAAGGTTTGTTTGTCAAGATCAACATGGATGGTGTTCCTATAGGGAGAAAAGTGGACCTCAATGCCTATGACAGCTATGAAAATCTCTCTTCCGCCGTGGACGAGCTATTCAGAGGTCTTCTTGCTGCTCAAAGAGATTCCTCTGCTGGTGGAGTTCACAACAAGCAGGAGGAAGAGAAAGCAATTACGGGGTTATTGGATGGAAGTGGAGAGTATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCACATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACCCTTGGGAGTAAGCAAGACAAGATACCCCTTGACTCAGCAATGAAATGA

>Glyma15g02350.3   sequence type=CDS   gene model=Glyma15g02350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGAAAGGTCAAGAAACGAGGCATCTCCTCAGCTGTTAGATTTGATCTCAAACGAGAGAGAGTGGCAGATGAACAAGAGAAACGAAGGAAAATCCTCAGAAGAAAGAAAGCTTGAACTGAGGCTTGGTCCACCTGGTGAAGACTGGTCTCTGGGCGGTAAAATGAAGAACACAGAAAGAGAAGAATCTCTTCTCTCTCTTGGTTGCTTCTCTCCTAACAATGGGTTCCAGAGCAAGGCTTCTCCATGGCCAAACTACCACCACCACCACCAGGGTAACAACAACAAAGCCTCTTCTTCATCATTTCTTCAGTGCCCTAAGGTTGTGGTAGAGTTGCAGAATGGTGGTGATGGCAAAGTATTCTCTCCCTCTTCTGCAAATACAGCTGTGTCCCAGCCCAACACCTCTCAGAAAAGAACTGCTCCTGCTCCAGTGGTGGGGTGGCCCCCAATTCGTTCCTTCAGGAAGAACCTTGCAAGCAGCAGCAGTGCTTCTAAGCCACCTCCTGAGTCTCAGGCTGAGCAGCACAACAAGGTTGCTGGTAAAAAACCTGTTGACAACTATGCTAATAATAAAGGTTTGTTTGTCAAGATCAACATGGATGGTGTTCCTATAGGGAGAAAAGTGGACCTCAATGCCTATGACAGCTATGAAAATCTCTCTTCCGCCGTGGACGAGCTATTCAGAGGTCTTCTTGCTGCTCAAAGAGATTCCTCTGCTGGTGGAGTTCACAACAAGCAGGAGGAAGAGAAAGCAATTACGGGGTTATTGGATGGAAGTGGAGAGTATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCACATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACCCTTGGGAGTAAGCAAGACAAGATACCCCTTGACTCAGCAATGAAATGA

Predicted protein sequences of Glyma15g02350

Limit To All Plant Sequences

>Glyma15g02350.1   sequence type=predicted peptide   gene model=Glyma15g02350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDERSRNEASPQLLDLISNEREWQMNKRNEGKSSEERKLELRLGPPGEDWSLGGKMKNTEREESLLSLGCFSPNNGFQSKASPWPNYHHHHQGNNNKASSSSFLQCPKVVVELQNGGDGKVFSPSSANTAVSQPNTSQKRTAPAPVVGWPPIRSFRKNLASSSSASKPPPESQAEQHNKVAGKKPVDNYANNKGLFVKINMDGVPIGRKVDLNAYDSYENLSSAVDELFRGLLAAQRDSSAGGVHNKQEEEKAITGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSAFTLGSKQDKIPLDSAMK*

>Glyma15g02350.3   sequence type=predicted peptide   gene model=Glyma15g02350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDERSRNEASPQLLDLISNEREWQMNKRNEGKSSEERKLELRLGPPGEDWSLGGKMKNTEREESLLSLGCFSPNNGFQSKASPWPNYHHHHQGNNNKASSSSFLQCPKVVVELQNGGDGKVFSPSSANTAVSQPNTSQKRTAPAPVVGWPPIRSFRKNLASSSSASKPPPESQAEQHNKVAGKKPVDNYANNKGLFVKINMDGVPIGRKVDLNAYDSYENLSSAVDELFRGLLAAQRDSSAGGVHNKQEEEKAITGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSAFTLGSKQDKIPLDSAMK*

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