Report for Sequence Feature Glyma15g02280
Feature Type: gene_model
Chromosome: Gm15
Start: 1539628
stop: 1541783
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g02280
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G21360 AT
Annotation by Michelle Graham. TAIR10: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:7522865-7524036 FORWARD LENGTH=330
SoyBase E_val: 0 ISS
GO:0055114 GO-bp
Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0016491 GO-mf
Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity
SoyBase N/A ISS
PF02668 PFAM
Taurine catabolism dioxygenase TauD, TfdA family
JGI ISS
UniRef100_G7IHZ5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Clavaminate synthase-like protein n=1 Tax=Medicago truncatula RepID=G7IHZ5_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1MCU9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MCU9_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g02280
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma15g02280
Paralog Evidence Comments
Glyma13g43090 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g02280 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g019700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g02280
Coding sequences of Glyma15g02280
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g02280.1 sequence type=CDS gene model=Glyma15g02280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGAAGTTCATTGGTGGAAATCCAAGTTCCCGGGCAGAAGTTTGTGAACGGAGTTCCGTTCCCCGCTGTGGTGTCTCCTCCACCTGCAACTGCAAGTGCGGTTCCTCTTACGGACTCCGTCAAAACCCAGAAAGCTTTCCTTGAATCATTGCTACTCCAATCGGGTGCTGTCCTTTTCAGGGGATTCCCACTCTCCACCGCTTCTCACTTCAACGACGTCGTCGAAGCATTCGGCTACGACGAGCTTCCCTACGTGGGCGGCGCCGCTCCCCGCACCAACGTGGTGGGTCGCGTCTTCACCGCCAATGAGTCCCCACCCGATCAGAAGATCCCTTTCCACCACGAAATGGCTCAGGTTCCTCAATTTCCTTCGAAACTGTTATTCTTCTGCGAAGTGGAACCCAGGAGTGGGGGTGAAACCCCCATTGTTCTTAGCCACGTGGTGTATCAAAGGATGAAGGACAAGTACCCTGAGTTTGTGGAGAGACTAGAGAAGCATGGTTTGCTTTACACCAGGGTTTTAGGGGAAGATGACAACCCTAACTCTCCAATTGGCCGTGGCTGGAAATCTACCTTCTTGACCACTGACAAGACCCTCGCTCAACAAAGGGCGGCTAAACTGGGTATGAAGTTGGAATGGTTGGAAGATGGGGTGAAGACAGTCATGGGTCCAATTCCGGGCGTTAAATATGATGAGAGGAGACAACGAAAGATATGGTTTAACAGCATGGTGGCTGCTTACACTGGTTGGGAAGATGAACGCAACGATCCTGTTAAGGCTGTGACCTTTGGGGATGGTCTACCATTACCCTTTCACATTGTCTATGATTGTCTCCACATTCTGGAGGACGAATCTGTTGCCATTCCTTGGCAAAAAGGAGACATTCTCTTAATTGATAATTGGGCTGTCCTCCATTCCCGAAGATCTTTTGATCCACCTCGCAGGGTCCTAGCTTCCCTTGTCAAGTGA
Predicted protein sequences of Glyma15g02280
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g02280.1 sequence type=predicted peptide gene model=Glyma15g02280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGSSLVEIQVPGQKFVNGVPFPAVVSPPPATASAVPLTDSVKTQKAFLESLLLQSGAVLFRGFPLSTASHFNDVVEAFGYDELPYVGGAAPRTNVVGRVFTANESPPDQKIPFHHEMAQVPQFPSKLLFFCEVEPRSGGETPIVLSHVVYQRMKDKYPEFVERLEKHGLLYTRVLGEDDNPNSPIGRGWKSTFLTTDKTLAQQRAAKLGMKLEWLEDGVKTVMGPIPGVKYDERRQRKIWFNSMVAAYTGWEDERNDPVKAVTFGDGLPLPFHIVYDCLHILEDESVAIPWQKGDILLIDNWAVLHSRRSFDPPRRVLASLVK*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
