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Report for Sequence Feature Glyma15g02260

Feature Type:gene_model
Chromosome:Gm15
Start:1522105
stop:1523763
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G16360AT Annotation by Michelle Graham. TAIR10: HPT phosphotransmitter 4 | chr3:5554351-5555518 FORWARD LENGTH=145 SoyBaseE_val: 3.00E-77ISS
GO:0000160GO-bp Annotation by Michelle Graham. GO Biological Process: phosphorelay signal transduction system SoyBaseN/AISS
GO:0009736GO-bp Annotation by Michelle Graham. GO Biological Process: cytokinin mediated signaling pathway SoyBaseN/AISS
GO:0080036GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cytokinin mediated signaling pathway SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0004871GO-mf Annotation by Michelle Graham. GO Molecular Function: signal transducer activity SoyBaseN/AISS
GO:0009927GO-mf Annotation by Michelle Graham. GO Molecular Function: histidine phosphotransfer kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG4747 KOG Two-component phosphorelay intermediate involved in MAP kinase cascade regulation JGI ISS
PF01627PFAM Hpt domain JGI ISS
UniRef100_G7IHZ9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Histidine phosphotransfer protein n=1 Tax=Medicago truncatula RepID=G7IHZ9_MEDTR SoyBaseE_val: 1.00E-88ISS
UniRef100_UPI000233B17DUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233B17D related cluster n=1 Tax=unknown RepID=UPI000233B17D SoyBaseE_val: 2.00E-107ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g02260 not represented in the dataset

Glyma15g02260 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g43110 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g019500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma15g02260.2   sequence type=CDS   gene model=Glyma15g02260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAAAATCCCTTCCCGCAGGCAGGTTGCTGCCATGAAACAGTCCCTCTTTGATCAGGGATATCTGGATGAGCAGTTTATCCAACTGGAAGAATTGCAGGATGATGCTAATCCTAACTTCGTTGAAGAAATTGTCACTCTTTACTACCGTGATTCCTCCAGGCTTATCTCTAGCTTGGACCACACTCTGGAAAGTAACCCACTGGATTTCAACAAGCTGGACACAATTATGCATCAGTTTAAAGGAAGCAGCTCAAGCATCGGAGCCAAAAAGGTGAAAGCAGAGTGCACTCTGTTCAGGGAATATTGCAGGGCAAGAAATGGAGAAGGATGCAGGAGGAGCTTCCAACAAATGAAGAGAGAATATGCAACACTGAGAAAGAAACTTGAAACATATTTTCAGCTGGCTAGGCAAGTTGGGCCCGTGGAGACAGCATTTAGGCCCAAGTAA

>Glyma15g02260.2   sequence type=predicted peptide   gene model=Glyma15g02260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDKIPSRRQVAAMKQSLFDQGYLDEQFIQLEELQDDANPNFVEEIVTLYYRDSSRLISSLDHTLESNPLDFNKLDTIMHQFKGSSSSIGAKKVKAECTLFREYCRARNGEGCRRSFQQMKREYATLRKKLETYFQLARQVGPVETAFRPK*







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