Glyma15g02070 - SoyBase

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Report for Sequence Feature Glyma15g02070

Feature Type:	gene_model
Chromosome:	Gm15
Start:	1382860
stop:	1388200
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g02070

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G16260	AT	Annotation by Michelle Graham. TAIR10: tRNAse Z4 \| chr3:5509397-5513118 FORWARD LENGTH=942	SoyBase	E_val: 0	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0042779	GO-bp	Annotation by Michelle Graham. GO Biological Process: tRNA 3'-trailer cleavage	SoyBase	N/A	ISS
GO:0042780	GO-bp	Annotation by Michelle Graham. GO Biological Process: tRNA 3'-end processing	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
GO:0016891	GO-mf	Annotation by Michelle Graham. GO Molecular Function: endoribonuclease activity, producing 5'-phosphomonoesters	SoyBase	N/A	ISS
GO:0042781	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 3'-tRNA processing endoribonuclease activity	SoyBase	N/A	ISS
KOG2121	KOG	Predicted metal-dependent hydrolase (beta-lactamase superfamily)	JGI		ISS
PTHR12553	Panther	ELAC RELATED	JGI		ISS
PTHR12553:SF3	Panther	gb def: hypothetical protein [schizosaccharomyces pombe]	JGI		ISS
UniRef100_G7IUN1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ribonuclease Z n=1 Tax=Medicago truncatula RepID=G7IUN1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233AD34	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233AD34 related cluster n=1 Tax=unknown RepID=UPI000233AD34	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g02070

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g02070

Paralog	Evidence	Comments
Glyma13g43270	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g02070 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g017900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g02070

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g02070

Limit To All Plant Sequences

>Glyma15g02070.1   sequence type=CDS   gene model=Glyma15g02070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCAAGTATCAAAGTTTGGGCACCTTCTTCTTCATTCTTCTCTCCCCAAACCCTCCAACTCCAACATTCAATTCCGTTCTCTTCTAACACTTCTTGCCTCGTCCTCCAAACGACACCGTAGCATCCCTCCTTTCCGCAGAAAAAGCACGACGCCAAAGCCAATGGAAGTGAAGGAGGAGTCGTCGAGCTTCAACAAGAGAAGGGCCCAGGGCAGAGACAAAAACGACATCTCCCAGAAGAACCTCTATCTCAAAGTTCGCAAGCTCAACCCAATCAATACCATCTCTTTTGTTCAGATATTGGGAACTGGCATGGATACTCAAGATACTTCTCCGTCAGTCTTGCTTTTCTTCGACAATCAAAGATTTATATTCAATGCTGGGGAGGGATTGCAAAGGTTTTGCACGGAGCATAAGATTAAGTTATCAAAGATAGATCACATATTTCTTTCTCGTGTCTGTTCTGAGACTGCCGGTGGCCTTCCAGGCTTACTGCTTACTTTGGCTGGCATGGGAGAAGATGGGATGTCTGTTAATATATGGGGGCCATCTGATCTCAAGTATTTAGTAGATGCCATGAGATCTTTTATTCCCAATGCTGCCATGCTTTTGGACCCCATTGTTCTTATTGATGGTGAGGTGGTCAAAATATCAGCCATTATCCTACAACCAAATTGCATTGAAGGTCAGGAGAGGATGGATCATAGTCCAGAAACCCTTGACTCTCCCAATGGCAAAAAGCTACCTGCTGCAAAACCTGGTGATATGTCTGTTGTATATGTTTGTGAACTGCCTGAAATCAAGGGGAAATTTGATCCAGAGAAAGCTAAGGCCCTTGGTCTCAGACCTGGGCCTAAGTATCGTGAACTGCAACTTGGAAACTCAGTGAAATCCGATCACCAGAATATCATGGTTCATCCAAGTGATGTCTTGGGTCCTTCTGTTCCTGGTCCCATTGTACTCCTTGTTGATTGCCCAACAGAATCCCATTTGGAAGCATTATTGTCTATGCAATCACTTGCCAGTTATTGTGATCAAACAGACAACCTACCAGAGGCTGGTAAGAGTGTCACTTGTGTAATTCACCTAACTCCTGCATCTGTTGTGAGTTGTTCAAATTACCAAAAATGGATGAAGAAATTTGGTTCTGCACAACACATCATGGCTGGACATGAAAAGAAGAATGTAGAGATTCCTATTTTGAAAGCTAGTGCAAGAATTGCAACACGACTTAATTACTTGTGTCCTCAGTTCTTTCCAGCTCCAGGATTATGGTCTCTTCCTAATCACGATAGCTCAAAATTTGGCTGTCTTGCTTCACGTGAGGATTCACTTTCAGAATTTTCTGAAGTCATTTCTGCTGAAAATCTTCTTAAGTTTACATTGCGTCCTTATGCTCAACTTGGGTTGGATAGATCTTGTATTCCTACTAGGGCGGATTCCTCAGAAATCATTGACGAGTTACTGTCAGAGATTCCAGAGGTTTTGGAAGCAGTAAAGCATGTAAGTCAGCTCTGGCAAGAATGTAGTCAGACAAAAGAGGATTTAACTCCAGTGGCGGATCATGGGATGATGAATGAGGAACCATGGCTATGTGCTAATGGTATTCCTGCTTGTTTGGAAAATATAAGGAGAGATGATTTGGAGATAGTTCTTCTTGGAACTGGTTCATCCCAGCCATCAAAATACCGAAATGAGGTTTGCTCTTGGATTGTGGTGAAGGAACCTTGGGACAACTTAAAAGAAGGCAAATATGGTGTTACTGGCGCTGATGATGCTGTGAGAACTTTGAGGTGCATTTGGATTTCTCATATTCATGCTGATCACCATACAGGCTTGGCCAGGATCCTTGCTCTGCGCCGTGATTTGCTGAGGGGGGTGCCTCATGAACCAGTGCTTGTTGTAGGACCAAGGCAGCTTAAGAGATATTTAGATGCATACCAAAGACTAGAAGATTTAGATATGCTGTTTCTTGATTGCAAGCACACCACAGCAGCTTCATTGGAAGCTTTTGAAGATGATTTCCCAGGAAATTCAGTTAATTCTCAGAATCTGAAGAATAATAATGGGGACTTAATTGCATCAAAAGTTAATTCTACTTTATTTGCTAGAGGATCTCTTATGCAAAGCTATTTTAAAAGACCAGGTAGTCCTGTTGACAAAGATGTAGTTTCTCCCATCCTAAAGAAATTTAAGGGGGTAATCCAGGAAGCTGGTCTGAAGGCCTTGATTAGTTTCCCCGTTGTACATTGCCCTCAGGCATTTGGTGTCGTTTTAAAAGCAGAAGAGAGGACTAATAGTGTCGGAAAAGTGATACCTGGCTGGAAGATTGTATATTCTGGTGACACAAGGCCCTGCCCAGAGCTAATAGAAGCATCTCGTGGTGCAACAGCAACTTTCGAGGATGCCATGGTAGAGGAGGCTATAGCAAGAAATCACAGCACCACAAATGAAGCCATAAAAATGGGACAGTCTGCCAATGCATATCGAACCATACTGACTCATTTCAGCCAAAGATATCCTAAAATTCCTGTATTCGATGAAACACACATGCATAAAACATGTATTGCATTTGACATGATGAGTGTCAATGTAGCTGATTTGTCCGTGCTTCCCAAGGTTCTTCCATATTTGAAATTGCTTTTCAGAAATGAAATGATGGTTGACGAGTCAGATGATGTAGTGGAAGCTGTGACTTCAGCTTCTTGA

Predicted protein sequences of Glyma15g02070

Limit To All Plant Sequences

>Glyma15g02070.1   sequence type=predicted peptide   gene model=Glyma15g02070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQVSKFGHLLLHSSLPKPSNSNIQFRSLLTLLASSSKRHRSIPPFRRKSTTPKPMEVKEESSSFNKRRAQGRDKNDISQKNLYLKVRKLNPINTISFVQILGTGMDTQDTSPSVLLFFDNQRFIFNAGEGLQRFCTEHKIKLSKIDHIFLSRVCSETAGGLPGLLLTLAGMGEDGMSVNIWGPSDLKYLVDAMRSFIPNAAMLLDPIVLIDGEVVKISAIILQPNCIEGQERMDHSPETLDSPNGKKLPAAKPGDMSVVYVCELPEIKGKFDPEKAKALGLRPGPKYRELQLGNSVKSDHQNIMVHPSDVLGPSVPGPIVLLVDCPTESHLEALLSMQSLASYCDQTDNLPEAGKSVTCVIHLTPASVVSCSNYQKWMKKFGSAQHIMAGHEKKNVEIPILKASARIATRLNYLCPQFFPAPGLWSLPNHDSSKFGCLASREDSLSEFSEVISAENLLKFTLRPYAQLGLDRSCIPTRADSSEIIDELLSEIPEVLEAVKHVSQLWQECSQTKEDLTPVADHGMMNEEPWLCANGIPACLENIRRDDLEIVLLGTGSSQPSKYRNEVCSWIVVKEPWDNLKEGKYGVTGADDAVRTLRCIWISHIHADHHTGLARILALRRDLLRGVPHEPVLVVGPRQLKRYLDAYQRLEDLDMLFLDCKHTTAASLEAFEDDFPGNSVNSQNLKNNNGDLIASKVNSTLFARGSLMQSYFKRPGSPVDKDVVSPILKKFKGVIQEAGLKALISFPVVHCPQAFGVVLKAEERTNSVGKVIPGWKIVYSGDTRPCPELIEASRGATATFEDAMVEEAIARNHSTTNEAIKMGQSANAYRTILTHFSQRYPKIPVFDETHMHKTCIAFDMMSVNVADLSVLPKVLPYLKLLFRNEMMVDESDDVVEAVTSAS*

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