SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G12740 | AT | Annotation by Michelle Graham. TAIR10: ALA-interacting subunit 1 | chr3:4049739-4051561 FORWARD LENGTH=350 | SoyBase | E_val: 2.00E-150 | ISS |
| GO:0009723 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus | SoyBase | N/A | ISS |
| GO:0009738 | GO-bp | Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0015914 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phospholipid transport | SoyBase | N/A | ISS |
| GO:0035556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| KOG2952 | KOG | Cell cycle control protein | JGI | ISS | |
| PTHR10926 | Panther | CDC50-RELATED | JGI | ISS | |
| PTHR10926:SF0 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF03381 | PFAM | LEM3 (ligand-effect modulator 3) family / CDC50 family | JGI | ISS | |
| UniRef100_G7IUN2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cell division control protein n=1 Tax=Medicago truncatula RepID=G7IUN2_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MCS8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1MCS8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma15g02060 not represented in the dataset |
Glyma15g02060 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g43281 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g017800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g02060.1 sequence type=CDS gene model=Glyma15g02060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATATGCCGGTTGACAAAGACGACGCTCCCACTTCAAAGAGAACTTCCAAGAAACCCATATATTCAAAATTCTCACAGCAAGAACTCCCTGCATGGAAACCGATTCTAACACCTGGATGGGTCATTGCAACATTTTCTGTCATTGGAGTCATCTTCATCCCAATTGGTCTAGCTTCCTTGTTTTCGTCAGAGAGTGTGGAGGAAGCTGTTTTCAGATATGATGAGACTTGCCTTCCTCCCTCACATGCTCAAAATGCAGTGGCTTATATTCAAAGCGATACCACCAACAAGACCTGCATCACCAAATGGACTGTTGAGCATAAAATGGAAGCTCCTATTTATATCTACTATCAGCTTGACAATTACTACCAGAACCATCGCAGATATGTTAAGAGTAGAAACGACAAGCAACTGTGGAATAAGGCAGCTGAGGGGGAAACAAACAATTGTTTTCCCGAAGACAAGACAAAAGATAACCAGCCTATTGTTCCCTGTGGCCTCATTGCATGGAGTATGTTCAACGACACGTACAAATTTTCAACCAGCAACAAGGACTTGACGGTCAACAAAAAGAACATTGCATGGGGGAGTGAGCAAAGGTCCAAATTTGCCTCTGATGTTTATCCAAAAAACTTTCAGCGCGGAGATTTGATTGGGGGTGCAAAACTCAACGAGAGTATACCCTTAAGTCAACAAGAGGATCTGATAGTGTGGATGCGAACGGCAGCACTACCTACATTCAGAAAACTATATGGGAAGATAGAGGTTGACCTTGAAGTGAATGATGAGATAGAAATAGCAATAGAAAACAATTATAACACATATGAGTTTGGAGGGAAAAAGAATTTGGTTCTCTCAACCACAACTGTCATGGGAGGAAAAAATCCCTTCTTGGGGACTGCATATCTTTTCGTTGGTGGCCTATCCTTGTTCTGTGCCATAGCATTCATACTTCTCTATGTCATCAAGCCAAGACCTCTTGGGGACCCGTCTTACTTGTCTTGGAACAGAAATCCAGGGAGTATGAAATGA
>Glyma15g02060.1 sequence type=predicted peptide gene model=Glyma15g02060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDMPVDKDDAPTSKRTSKKPIYSKFSQQELPAWKPILTPGWVIATFSVIGVIFIPIGLASLFSSESVEEAVFRYDETCLPPSHAQNAVAYIQSDTTNKTCITKWTVEHKMEAPIYIYYQLDNYYQNHRRYVKSRNDKQLWNKAAEGETNNCFPEDKTKDNQPIVPCGLIAWSMFNDTYKFSTSNKDLTVNKKNIAWGSEQRSKFASDVYPKNFQRGDLIGGAKLNESIPLSQQEDLIVWMRTAALPTFRKLYGKIEVDLEVNDEIEIAIENNYNTYEFGGKKNLVLSTTTVMGGKNPFLGTAYLFVGGLSLFCAIAFILLYVIKPRPLGDPSYLSWNRNPGSMK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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