Glyma15g02030 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma15g02030

Feature Type:	gene_model
Chromosome:	Gm15
Start:	1346640
stop:	1349631
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g02030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G02650	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr3:568135-569865 FORWARD LENGTH=576	SoyBase	E_val: 2.00E-174	ISS
GO:0000085	GO-bp	Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009220	GO-bp	Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0009640	GO-bp	Annotation by Michelle Graham. GO Biological Process: photomorphogenesis	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0034968	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone lysine methylation	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_B9RM09	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RM09_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1MCS2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MCS2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g02030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g02030

Paralog	Evidence	Comments
Glyma13g43320	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g02030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g017400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g02030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g02030

Limit To All Plant Sequences

>Glyma15g02030.2   sequence type=transcript   gene model=Glyma15g02030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACAATTAGAATAGTAGAAAGAAATTTGAAAAGAGAAAAAAAAAAAAAAGAGAGATCAAATTAACATGCAGTTCGCACTTCGCAGAGGCAAGTGCGTTTGCTTGCACGCAAAGGCTGCGAAAATGAGTGAAACGCTGTCGTATAAGTTGTGACATATTAAAGCTGATGCTTTTATTTAGGTTACGCACTTACACTTACAGTTAAGAAGAAGAAGAAGAAGGCCGAAGAAGTATCAAATTAACACATTCTCGATCGAGAAGAAGAAGAATGTGGACGCGGATACTCGCACGAGCAACACGTGCAGTTACCGTTGCCGGCAACTATTCACCCATTCACCAACGCATCTGTGACCCTATCTTTCTCAAAATCCCCAAATCAACTTTTCCCCAAATTTTCAATAACCCTCGATTTTTGGTCACCTCCAACCTCGACAATGAGCTCTCACCGGATTCTTCAGTGAACAGCGGTGACAGACAGCTCGCAGAAGAAGGAGAAGGAGCAGGAGGAGGAGGAGACAGGTACGAGGTTGATTCCGACAAATTGGAAAGTGTGCTGCGTCTTCTCCAAACCAGCGCTGATGGGTCCCTCGAGTCTTGTTTGGATGATATTGATTTGACACTGCACCAGCAATTGGTAACGAAAATAACCGAAACTCCGTTTGTTTTGAGTGAGAATCTGATAAGGTTTTTCTGGTGGGCATGGAGTGAGAGATCATTGGGGGTGACAACCCCGATGGTGGAGTCTCTTGTTTTGGCCATATGTGGAAATGATGTGAGGAAGAAAGAGGTGGTGTACTCGTTGTGGGACTTGGTTAAGGAGATTGGAGAGAAGGAGAGTGGAATCCTCAATGTGAAGATTCTCAATGAGTTGATTAGTTCCTTCTTGAGGTTGGGGAAAGGGAAGGCCGCATTGGAGGTGTTTAATAAATTTGAGGCTTTTCACTGTGTTCCTGATGCAGACACTTATTACTTTACAATTGAAGCGCTTTGTCGGCGGCGAGCTTTGGATTGGGCTTGTGGTGTTTGTCAGAAGATGGTTGATGCGCAGATATTGCCTGATGGTGAGAAAGTTGGCGCCATTTTGTCTTGGTTGTGTAAAGGGAAGAAGGCTAAGGAAGCCCATGGAGTTTATGTGGTGGCAACGGAGAAAGGGAAACAGCCACCCGTGAATGTGGTTAGCTTTTTGGTTGTGAAGCTCTGTGGAGAAGATGAAACTGTGAAATTTGCTCTGGAGATGTTGGAGGATATCCCTGAGGAGAAGAGGGAACGAGCGATAAAGCCGTTTTTGGCGGTTGTCCGGGCGTTGTGTAGGATTAAGGAAGTTGATAAGGCCAAGGAGTTGGTGTTGAAGATGATTGAGGATGGGCCGCCGCCTGGGAATGCTGTTTTCAATTTTGTTGTTACGGCTTATTCAAAGGCTGGGGAAATGGGGAAAGCTGTGGAGATGATGAGGCTGATGGAAAGTAGGGGCTTGAGACCAGATGTGTACACTTATACTGTTCTTGCTAGTGCTTATTCAAATGGTGGGGAGATGGAAGAGGCACAGAAGATCTTGGCAGAAGTAAAAAAGAAGCATGCTAAGTTGGGACCTGTAATGTTCCACACTCTGATTCGTGGATATTGCAAGTTGGAACAGTTTGATGAGGCTTTGAAGTTATTGGCTGAGATGAAAGATTATGGTGTCCATCCCAGTGTTGATGAGTATGACAAGTTGATACAGTCTCTCTGCTTGAAGGCTTTGGATTGGGAAATGGCAGAAAAGCTACACGAGGAAATGAAAGAGAGTGGTTTGCATCTCAAGGGCATCACGAGGGGTTTGATTAGAGCTGTCAAGGAGATGGAGAAGGAGGTTGTGGAGGCTGGGAGCATTACTGCAGCAGTGTAAACATTGGTTGCTCTTTGAGACTCATACACAGACACACCAAGAAGAAGGCTGTTTACAAGTGGAATACATAGATGCAAAAGGCTTAGTTAGTTGCTTACCGTATTTGCTGTATTTGGTTGATTGAGATTCTCTTTCAATGAGTAGGGAGTTGATCACGATTCTGAATCCAAAAGGCTGCCTTGGATTTTGGTAACTATGTGGAGGGGAAATATGGAGGTGGTTTTGTGTTCGCAATATGTTTTTCTATGCTTAACAAAGTGCTGTATTGATGCTTTTTTTGGGTGTGGAGGTTTATGGTCTCTATCAGGATGCGGCTCAAGCAGTTGGTGTGCAGGTGAATTCGTGGGCTTAATGTGTGTATAAAGTGAAGCTTCTACTCATATTAAACAGACAGCAGATATTGGAGGTTATTACTTTAATTAAATTAATGAATTTGATTTTGTATTAGTAGATTATCATTTCAGTTTGGTCCAGCGGGGGAGGAGGATATGAGGCAATGGATGACTGTTCGAGGCTCTATACTGGTTTTGTTTTATTTCAAAGGGACTTCGTTTTATTTAGTTGAAATGGTTATCAGGTGTTTACTGTTTTATTTTGGGTAGTGTGGAATGTTCTATGTACTCGGGTGATTATAAAACATACATGGCGATGGCTTTTAGTGAGTGGGTTTTATGTTTACTGCATGATGGGTACTGGTTTGTAGTGGTCACTGTTTTGTGAACCTTTTTCAAATGTACTCATGCTGCTCAACTCAAGCCATATTAATAAAAGTAATTTGCCTATAAAAATAAAAATGAGTTGGTGGTATCTAGATTAATTTGTGATACCTAATTA

Coding sequences of Glyma15g02030

Limit To All Plant Sequences

>Glyma15g02030.1   sequence type=CDS   gene model=Glyma15g02030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGACGCGGATACTCGCACGAGCAACACGTGCAGTTACCGTTGCCGGCAACTATTCACCCATTCACCAACGCATCTGTGACCCTATCTTTCTCAAAATCCCCAAATCAACTTTTCCCCAAATTTTCAATAACCCTCGATTTTTGGTCACCTCCAACCTCGACAATGAGCTCTCACCGGATTCTTCAGTGAACAGCGGTGACAGACAGCTCGCAGAAGAAGGAGAAGGAGCAGGAGGAGGAGGAGACAGGTACGAGGTTGATTCCGACAAATTGGAAAGTGTGCTGCGTCTTCTCCAAACCAGCGCTGATGGGTCCCTCGAGTCTTGTTTGGATGATATTGATTTGACACTGCACCAGCAATTGGTAACGAAAATAACCGAAACTCCGTTTGTTTTGAGTGAGAATCTGATAAGGTTTTTCTGGTGGGCATGGAGTGAGAGATCATTGGGGGTGACAACCCCGATGGTGGAGTCTCTTGTTTTGGCCATATGTGGAAATGATGTGAGGAAGAAAGAGGTGGTGTACTCGTTGTGGGACTTGGTTAAGGAGATTGGAGAGAAGGAGAGTGGAATCCTCAATGTGAAGATTCTCAATGAGTTGATTAGTTCCTTCTTGAGGTTGGGGAAAGGGAAGGCCGCATTGGAGGTGTTTAATAAATTTGAGGCTTTTCACTGTGTTCCTGATGCAGACACTTATTACTTTACAATTGAAGCGCTTTGTCGGCGGCGAGCTTTGGATTGGGCTTGTGGTGTTTGTCAGAAGATGGTTGATGCGCAGATATTGCCTGATGGTGAGAAAGTTGGCGCCATTTTGTCTTGGTTGTGTAAAGGGAAGAAGGCTAAGGAAGCCCATGGAGTTTATGTGGTGGCAACGGAGAAAGGGAAACAGCCACCCGTGAATGTGGTTAGCTTTTTGGTTGTGAAGCTCTGTGGAGAAGATGAAACTGTGAAATTTGCTCTGGAGATGTTGGAGGATATCCCTGAGGAGAAGAGGGAACGAGCGATAAAGCCGTTTTTGGCGGTTGTCCGGGCGTTGTGTAGGATTAAGGAAGTTGATAAGGCCAAGGAGTTGGTGTTGAAGATGATTGAGGATGGGCCGCCGCCTGGGAATGCTGTTTTCAATTTTGTTGTTACGGCTTATTCAAAGGCTGGGGAAATGGGGAAAGCTGTGGAGATGATGAGGCTGATGGAAAGTAGGGGCTTGAGACCAGATGTGTACACTTATACTGTTCTTGCTAGTGCTTATTCAAATGGTGGGGAGATGGAAGAGGCACAGAAGATCTTGGCAGAAGTAAAAAAGAAGCATGCTAAGTTGGGACCTGTAATGTTCCACACTCTGATTCGTGGATATTGCAAGTTGGAACAGTTTGATGAGGCTTTGAAGTTATTGGCTGAGATGAAAGATTATGGTGTCCATCCCAGTGTTGATGAGTATGACAAGTTGATACAGTCTCTCTGCTTGAAGGCTTTGGATTGGGAAATGGCAGAAAAGCTACACGAGGAAATGAAAGAGAGTGGTTTGCATCTCAAGGGCATCACGAGGGGTTTGATTAGAGCTGTCAAGGAGATGGAGAAGGAGGTTGTGGAGGCTGGGAGCATTACTGCAGCAGTGTAA

>Glyma15g02030.2   sequence type=CDS   gene model=Glyma15g02030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGACGCGGATACTCGCACGAGCAACACGTGCAGTTACCGTTGCCGGCAACTATTCACCCATTCACCAACGCATCTGTGACCCTATCTTTCTCAAAATCCCCAAATCAACTTTTCCCCAAATTTTCAATAACCCTCGATTTTTGGTCACCTCCAACCTCGACAATGAGCTCTCACCGGATTCTTCAGTGAACAGCGGTGACAGACAGCTCGCAGAAGAAGGAGAAGGAGCAGGAGGAGGAGGAGACAGGTACGAGGTTGATTCCGACAAATTGGAAAGTGTGCTGCGTCTTCTCCAAACCAGCGCTGATGGGTCCCTCGAGTCTTGTTTGGATGATATTGATTTGACACTGCACCAGCAATTGGTAACGAAAATAACCGAAACTCCGTTTGTTTTGAGTGAGAATCTGATAAGGTTTTTCTGGTGGGCATGGAGTGAGAGATCATTGGGGGTGACAACCCCGATGGTGGAGTCTCTTGTTTTGGCCATATGTGGAAATGATGTGAGGAAGAAAGAGGTGGTGTACTCGTTGTGGGACTTGGTTAAGGAGATTGGAGAGAAGGAGAGTGGAATCCTCAATGTGAAGATTCTCAATGAGTTGATTAGTTCCTTCTTGAGGTTGGGGAAAGGGAAGGCCGCATTGGAGGTGTTTAATAAATTTGAGGCTTTTCACTGTGTTCCTGATGCAGACACTTATTACTTTACAATTGAAGCGCTTTGTCGGCGGCGAGCTTTGGATTGGGCTTGTGGTGTTTGTCAGAAGATGGTTGATGCGCAGATATTGCCTGATGGTGAGAAAGTTGGCGCCATTTTGTCTTGGTTGTGTAAAGGGAAGAAGGCTAAGGAAGCCCATGGAGTTTATGTGGTGGCAACGGAGAAAGGGAAACAGCCACCCGTGAATGTGGTTAGCTTTTTGGTTGTGAAGCTCTGTGGAGAAGATGAAACTGTGAAATTTGCTCTGGAGATGTTGGAGGATATCCCTGAGGAGAAGAGGGAACGAGCGATAAAGCCGTTTTTGGCGGTTGTCCGGGCGTTGTGTAGGATTAAGGAAGTTGATAAGGCCAAGGAGTTGGTGTTGAAGATGATTGAGGATGGGCCGCCGCCTGGGAATGCTGTTTTCAATTTTGTTGTTACGGCTTATTCAAAGGCTGGGGAAATGGGGAAAGCTGTGGAGATGATGAGGCTGATGGAAAGTAGGGGCTTGAGACCAGATGTGTACACTTATACTGTTCTTGCTAGTGCTTATTCAAATGGTGGGGAGATGGAAGAGGCACAGAAGATCTTGGCAGAAGTAAAAAAGAAGCATGCTAAGTTGGGACCTGTAATGTTCCACACTCTGATTCGTGGATATTGCAAGTTGGAACAGTTTGATGAGGCTTTGAAGTTATTGGCTGAGATGAAAGATTATGGTGTCCATCCCAGTGTTGATGAGTATGACAAGTTGATACAGTCTCTCTGCTTGAAGGCTTTGGATTGGGAAATGGCAGAAAAGCTACACGAGGAAATGAAAGAGAGTGGTTTGCATCTCAAGGGCATCACGAGGGGTTTGATTAGAGCTGTCAAGGAGATGGAGAAGGAGGTTGTGGAGGCTGGGAGCATTACTGCAGCAGTGTAA

Predicted protein sequences of Glyma15g02030

Limit To All Plant Sequences

>Glyma15g02030.1   sequence type=predicted peptide   gene model=Glyma15g02030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWTRILARATRAVTVAGNYSPIHQRICDPIFLKIPKSTFPQIFNNPRFLVTSNLDNELSPDSSVNSGDRQLAEEGEGAGGGGDRYEVDSDKLESVLRLLQTSADGSLESCLDDIDLTLHQQLVTKITETPFVLSENLIRFFWWAWSERSLGVTTPMVESLVLAICGNDVRKKEVVYSLWDLVKEIGEKESGILNVKILNELISSFLRLGKGKAALEVFNKFEAFHCVPDADTYYFTIEALCRRRALDWACGVCQKMVDAQILPDGEKVGAILSWLCKGKKAKEAHGVYVVATEKGKQPPVNVVSFLVVKLCGEDETVKFALEMLEDIPEEKRERAIKPFLAVVRALCRIKEVDKAKELVLKMIEDGPPPGNAVFNFVVTAYSKAGEMGKAVEMMRLMESRGLRPDVYTYTVLASAYSNGGEMEEAQKILAEVKKKHAKLGPVMFHTLIRGYCKLEQFDEALKLLAEMKDYGVHPSVDEYDKLIQSLCLKALDWEMAEKLHEEMKESGLHLKGITRGLIRAVKEMEKEVVEAGSITAAV*

>Glyma15g02030.2   sequence type=predicted peptide   gene model=Glyma15g02030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWTRILARATRAVTVAGNYSPIHQRICDPIFLKIPKSTFPQIFNNPRFLVTSNLDNELSPDSSVNSGDRQLAEEGEGAGGGGDRYEVDSDKLESVLRLLQTSADGSLESCLDDIDLTLHQQLVTKITETPFVLSENLIRFFWWAWSERSLGVTTPMVESLVLAICGNDVRKKEVVYSLWDLVKEIGEKESGILNVKILNELISSFLRLGKGKAALEVFNKFEAFHCVPDADTYYFTIEALCRRRALDWACGVCQKMVDAQILPDGEKVGAILSWLCKGKKAKEAHGVYVVATEKGKQPPVNVVSFLVVKLCGEDETVKFALEMLEDIPEEKRERAIKPFLAVVRALCRIKEVDKAKELVLKMIEDGPPPGNAVFNFVVTAYSKAGEMGKAVEMMRLMESRGLRPDVYTYTVLASAYSNGGEMEEAQKILAEVKKKHAKLGPVMFHTLIRGYCKLEQFDEALKLLAEMKDYGVHPSVDEYDKLIQSLCLKALDWEMAEKLHEEMKESGLHLKGITRGLIRAVKEMEKEVVEAGSITAAV*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain