Glyma15g02020 - SoyBase

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Report for Sequence Feature Glyma15g02020

Feature Type:	gene_model
Chromosome:	Gm15
Start:	1339399
stop:	1343060
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g02020

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G29100	AT	Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein \| chr4:14341140-14344575 FORWARD LENGTH=407	SoyBase	E_val: 2.00E-58	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
UniRef100_G7IUP4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor bHLH68 n=2 Tax=Medicago truncatula RepID=G7IUP4_MEDTR	SoyBase	E_val: 2.00E-143	ISS
UniRef100_I1MCS0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MCS0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g02020

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g02020 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g017300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g02020

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g02020

Limit To All Plant Sequences

>Glyma15g02020.3   sequence type=transcript   gene model=Glyma15g02020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTAACATTGAACTCAATACTATTAATTAGTATTAAATTATGCCTTACCTCTTCCCCCAGCCCTAGCTATCTATCCCTGAAACAATCCCAAGGTGGAACCCCAAATTAAGGAATTAAGCACTGAGTAAGTATTAACCTCAAAACATTGCCCACCAGCTTTTCTGCTCTACTTTTATAATAAAGCAAAAGTAGGAATAAAAAGAAAAACTGAATAGATGAAAGAAAGTTATGAGAAAACAACATAAGCAAAGTTCCTGAACCCCATCTCTATAAAATACTGTGAGACCCCAAAGCTTTAAGTTTCTTCAACAGCTTGTAAGAAAGCAAAACAGTACAGAACTCTCAAACCTTTAGCCAAGGCTTGTTTGGGTGTACTGTACATACAAGGAAATATCACAAAGGAAACTCTTCCAGTGCAGCAAATGATGGTTGATAACCCTAACTGGTGGAGCATGCATCAACAACCTTCTTTGATCCCTCCCCAATATGTGTTTCCTCCTTCTTCAATTCCTTTTAATTCTTTGACTGAAAATCAAGAGCCTCCTCAGTCATGGAGTCAACTGTTTTTTACTGGATTACCGGGAGAAGAAGAGAAACTTGGGCCTAAGAAGTTGGAAAACTGGAATGTCCAAGATCTTAATACTGCTTCTAGAGTTCCATTTCTTGATGTAATAAGGCAACAAGTTTCTCAAAGGGGCAATTTGTACGACCACGGGCCATCTTGGTCACATATGGTGCCTGTTTCTTCCCCCGTGTCTTGTGTCACTAGCTTCAGTAGTAATAATATATTGGATTTCACTTATAACAAGTCAGATCATAGGAGAAATCTACAACAAGACCAAATATCCAAGTGTAATAGCACAGCCACTGTTGGAGTTTGTAAAAAGGCTAGGGTTCAGCCATCTTCAAGCCAAGCACCTCTCAAGGTGCGGAAGGAGAAGCTAGGTGATAGAATAACAACCCTTCACCAACTAGTTTCCCCGTTTGGAAAGACTGACACAGCTTCTGTCCTGTTAGAAGCCATAGGATATATAAGGTTCCTACAGGGCCAAATTGAGGCACTCAGCTCTCCTTACTTGGGCAGTGCATCAAAAAACATGAGGAATCAACAGTCTGTACATGGAGAAAGAAATTCTGTTCCAGAGGACCCCGGTCAGCTGTTGAATGACAATAATATTGGCCTGAAAAGAAAGGGAGCTCCGAACCAGGATGCGGAAGATCATAAAGCTAAGGATTTGAAGAGTAGAGGGTTGTGCTTGGTCCCGGTGTCTTGTACCCAGAATATGCATGTTGGAAGCTATTACTGGGCGCCCGCATACGGCAGAGGATTTTAACATGTAGCCAATTAATAGCAACGATATATCTTTTTCAGAGGAAGACTATTTGATATAATATATATAACATCGTGAGCAGTCAATCTGTGCCAATGAATTAAAAGGTTGATTGCTCACGATGCTATGCCTCATATTCAATTCTAATTTACCCTTAGTTTGTTAAATTAGTTATGCACTCTCTCTGATCTACTTAGAATAACTTATTTTTTAAGCTTTGTCAAAACATTATTAATTGTTTGGTTCTTCTAAATATGCGTTGGGGGGGAGCTGGAATTCTTTCTTATTTTGTTCACATGATTAGTG

Coding sequences of Glyma15g02020

Limit To All Plant Sequences

>Glyma15g02020.1   sequence type=CDS   gene model=Glyma15g02020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGTTGATAACCCTAACTGGTGGAGCATGCATCAACAACCTTCTTTGATCCCTCCCCAATATGTGTTTCCTCCTTCTTCAATTCCTTTTAATTCTTTGACTGAAAATCAAGAGCCTCCTCAGTCATGGAGTCAACTGTTTTTTACTGGATTACCGGGAGAAGAAGAGAAACTTGGGCCTAAGAAGTTGGAAAACTGGAATGTCCAAGATCTTAATACTGCTTCTAGAGTTCCATTTCTTGATGTAATAAGGCAACAAGTTTCTCAAAGGGGCAATTTGTACGACCACGGGCCATCTTGGTCACATATGGTGCCTGTTTCTTCCCCCGTGTCTTGTGTCACTAGCTTCAGTAGTAATAATATATTGGATTTCACTTATAACAAGTCAGATCATAGGAGAAATCTACAACAAGACCAAATATCCAAGTGTAATAGCACAGCCACTGTTGGAGTTTGTAAAAAGGCTAGGGTTCAGCCATCTTCAAGCCAAGCACCTCTCAAGGTGCGGAAGGAGAAGCTAGGTGATAGAATAACAACCCTTCACCAACTAGTTTCCCCGTTTGGAAAGACTGACACAGCTTCTGTCCTGTTAGAAGCCATAGGATATATAAGGTTCCTACAGGGCCAAATTGAGGCACTCAGCTCTCCTTACTTGGGCAGTGCATCAAAAAACATGAGGAATCAACAGTCTGTACATGGAGAAAGAAATTCTGTTCCAGAGGACCCCGGTCAGCTGTTGAATGACAATAATATTGGCCTGAAAAGAAAGGGAGCTCCGAACCAGGATGCGGAAGATCATAAAGCTAAGGATTTGAAGAGTAGAGGGTTGTGCTTGGTCCCGGTGTCTTGTACCCAGAATATGCATGTTGGAAGCTATTACTGGGCGCCCGCATACGGCAGAGGATTTTAA

>Glyma15g02020.3   sequence type=CDS   gene model=Glyma15g02020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGTTGATAACCCTAACTGGTGGAGCATGCATCAACAACCTTCTTTGATCCCTCCCCAATATGTGTTTCCTCCTTCTTCAATTCCTTTTAATTCTTTGACTGAAAATCAAGAGCCTCCTCAGTCATGGAGTCAACTGTTTTTTACTGGATTACCGGGAGAAGAAGAGAAACTTGGGCCTAAGAAGTTGGAAAACTGGAATGTCCAAGATCTTAATACTGCTTCTAGAGTTCCATTTCTTGATGTAATAAGGCAACAAGTTTCTCAAAGGGGCAATTTGTACGACCACGGGCCATCTTGGTCACATATGGTGCCTGTTTCTTCCCCCGTGTCTTGTGTCACTAGCTTCAGTAGTAATAATATATTGGATTTCACTTATAACAAGTCAGATCATAGGAGAAATCTACAACAAGACCAAATATCCAAGTGTAATAGCACAGCCACTGTTGGAGTTTGTAAAAAGGCTAGGGTTCAGCCATCTTCAAGCCAAGCACCTCTCAAGGTGCGGAAGGAGAAGCTAGGTGATAGAATAACAACCCTTCACCAACTAGTTTCCCCGTTTGGAAAGACTGACACAGCTTCTGTCCTGTTAGAAGCCATAGGATATATAAGGTTCCTACAGGGCCAAATTGAGGCACTCAGCTCTCCTTACTTGGGCAGTGCATCAAAAAACATGAGGAATCAACAGTCTGTACATGGAGAAAGAAATTCTGTTCCAGAGGACCCCGGTCAGCTGTTGAATGACAATAATATTGGCCTGAAAAGAAAGGGAGCTCCGAACCAGGATGCGGAAGATCATAAAGCTAAGGATTTGAAGAGTAGAGGGTTGTGCTTGGTCCCGGTGTCTTGTACCCAGAATATGCATGTTGGAAGCTATTACTGGGCGCCCGCATACGGCAGAGGATTTTAA

Predicted protein sequences of Glyma15g02020

Limit To All Plant Sequences

>Glyma15g02020.1   sequence type=predicted peptide   gene model=Glyma15g02020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMVDNPNWWSMHQQPSLIPPQYVFPPSSIPFNSLTENQEPPQSWSQLFFTGLPGEEEKLGPKKLENWNVQDLNTASRVPFLDVIRQQVSQRGNLYDHGPSWSHMVPVSSPVSCVTSFSSNNILDFTYNKSDHRRNLQQDQISKCNSTATVGVCKKARVQPSSSQAPLKVRKEKLGDRITTLHQLVSPFGKTDTASVLLEAIGYIRFLQGQIEALSSPYLGSASKNMRNQQSVHGERNSVPEDPGQLLNDNNIGLKRKGAPNQDAEDHKAKDLKSRGLCLVPVSCTQNMHVGSYYWAPAYGRGF*

>Glyma15g02020.3   sequence type=predicted peptide   gene model=Glyma15g02020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMVDNPNWWSMHQQPSLIPPQYVFPPSSIPFNSLTENQEPPQSWSQLFFTGLPGEEEKLGPKKLENWNVQDLNTASRVPFLDVIRQQVSQRGNLYDHGPSWSHMVPVSSPVSCVTSFSSNNILDFTYNKSDHRRNLQQDQISKCNSTATVGVCKKARVQPSSSQAPLKVRKEKLGDRITTLHQLVSPFGKTDTASVLLEAIGYIRFLQGQIEALSSPYLGSASKNMRNQQSVHGERNSVPEDPGQLLNDNNIGLKRKGAPNQDAEDHKAKDLKSRGLCLVPVSCTQNMHVGSYYWAPAYGRGF*

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