Glyma15g01950 - SoyBase

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Report for Sequence Feature Glyma15g01950

Feature Type:	gene_model
Chromosome:	Gm15
Start:	1273705
stop:	1274606
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g01950

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G79850	AT	Annotation by Michelle Graham. TAIR10: ribosomal protein S17 \| chr1:30041473-30041922 REVERSE LENGTH=149	SoyBase	E_val: 5.00E-53	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0032544	GO-bp	Annotation by Michelle Graham. GO Biological Process: plastid translation	SoyBase	N/A	ISS
GO:0000312	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid small ribosomal subunit	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0022627	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic small ribosomal subunit	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG1740	KOG	Predicted mitochondrial/chloroplast ribosomal protein S17	JGI		ISS
PTHR10744	Panther	40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER	JGI		ISS
PF00366	PFAM	Ribosomal protein S17	JGI		ISS
UniRef100_B7FMT1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 30S ribosomal protein S17 n=1 Tax=Medicago truncatula RepID=B7FMT1_MEDTR	SoyBase	E_val: 2.00E-51	ISS
UniRef100_I1MCQ9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MCQ9_SOYBN	SoyBase	E_val: 3.00E-100	ISS

Expression Patterns of Glyma15g01950

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g01950 not represented in the dataset	Glyma15g01950 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g01950

Paralog	Evidence	Comments
Glyma13g43360	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g01950 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g016400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g01950

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g01950

Limit To All Plant Sequences

>Glyma15g01950.1   sequence type=CDS   gene model=Glyma15g01950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGCTTGTGCAGCTCTCAACCCCATTTCTGAACGGCCATGGCCATGGCTCCAGCCTTCTCTGGAAACCCAGTTCGGCGGTGACTCAGACCCACTGGGCCCCGCCGAGTTTGCTGCCTCAAATCAATGCGATGAAGACGATGCAGGGAAAAGTGGTGTGCTCCACGAACGACAAGACGGTGGCAGTGGAGGTGGTGCGGCTGGCCCCTCACCCAAAGTACAAGAGGCGCGTGAGGAAGAAGAAGAAGTACCAGGCCCACGATCCCGATAACCAATTCAATGTCGGCGACATCGTCCAGCTCCAGAAGACCAGGCCCATCAGCAAGACCAAGGCCTTTCTCGCACTCCCCGTTCCCAAGAGGTCCTCCAACAGGCCCGAGCCCCAGCCCGATGAGCTTTCCATTCCCTTCGAGTCCCAGCCCCAGGCCTAG

Predicted protein sequences of Glyma15g01950

Limit To All Plant Sequences

>Glyma15g01950.1   sequence type=predicted peptide   gene model=Glyma15g01950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWLVQLSTPFLNGHGHGSSLLWKPSSAVTQTHWAPPSLLPQINAMKTMQGKVVCSTNDKTVAVEVVRLAPHPKYKRRVRKKKKYQAHDPDNQFNVGDIVQLQKTRPISKTKAFLALPVPKRSSNRPEPQPDELSIPFESQPQA*

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