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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G79870 | AT | Annotation by Michelle Graham. TAIR10: D-isomer specific 2-hydroxyacid dehydrogenase family protein | chr1:30044794-30045851 FORWARD LENGTH=313 | SoyBase | E_val: 9.00E-133 | ISS |
| GO:0009854 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidative photosynthetic carbon pathway | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0016618 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydroxypyruvate reductase activity | SoyBase | N/A | ISS |
| GO:0030267 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: glyoxylate reductase (NADP) activity | SoyBase | N/A | ISS |
| KOG0069 | KOG | Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) | JGI | ISS | |
| PTHR10996 | Panther | 2-HYDROXYACID DEHYDROGENASE | JGI | ISS | |
| PTHR10996:SF15 | Panther | 2-HYDROXYACID DEHYDROGENASE-RELATED | JGI | ISS | |
| PF00389 | PFAM | D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain | JGI | ISS | |
| PF02826 | PFAM | D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain | JGI | ISS | |
| UniRef100_G7II17 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Glyoxylate reductase n=1 Tax=Medicago truncatula RepID=G7II17_MEDTR | SoyBase | E_val: 1.00E-145 | ISS |
| UniRef100_I1MCQ6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MCQ6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma15g01920 not represented in the dataset |
Glyma15g01920 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g016100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g01920.1 sequence type=CDS gene model=Glyma15g01920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAATCAATCGGGGTGTTAATGACTTGCCCAATGCACAGTTACATCCAAGAAGAGCTCGCAAAACGCTTCAACCTCTTCAAACTCTGGCACTATCCCTCGTTCTCCGCCTTCGCCCAAGCCCACGCCCATTCCATTCGCGCCCTCGTCGCAAGCGCCAAAGTCGGAGTCGACGCCGCCACCATCGATTCCCTTCCCAACCTCGAGATTGTCTCCACCTACAGCGTCGGATACGACAACATCGACCTCCACAAATGCAGACACAGAGCAATCCCCGTCACCAACACGCCCAACGTTTTAACCGACGACGTGGCCGACGTAGCCATCGCCCTCGCCTTGTCCCTCCTCTGCAGAATTTGTCCCCGAAATTCCACTTGGCAATTCACACCAAAGCTTAGTGGTAAAGCGGTTGGAATAGTTGGGCTGGGAAGGATTGGTTGGGCGATTGCGAAGAGAGCCGAGGGTTTTGGGTGTCCAGTGAGTTACCATTCCAGATCTGAAAAATCAGAGACAGGGTATAAGTATTACTCTCACATCATTGATTTGGCGGCTAACTCTGAAGTGCTCTTTGTGGCGTGTACCCTTAGTGAAGAAACGCGTCACATTGTGAACCGTGGGGTTATTGATGCGTTGGGCCCGAAAGGGATTCTGATCAATGTTGGGCGAGGCCCGCACGTGGATGAGCCCGAACTGGTGGCCGCGTTGATTGAAGGGAGACTAGGTGGGGCGGGCCTTGATGTGTTTGAGAACGAGCCGGAGGTGCCTGAAGACCTGCTGGGGCTTGAGAATCTTGTCATGACCCCTCATGTGGGGACTGACACTCTGGAAACTTGCATCGCTATGGGAGACCTTGTAATTGCTAACTTAGAGGCACACTTTCTTGGCAACCCACTTTTCACACCTGTCCTTTAG
>Glyma15g01920.1 sequence type=predicted peptide gene model=Glyma15g01920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESIGVLMTCPMHSYIQEELAKRFNLFKLWHYPSFSAFAQAHAHSIRALVASAKVGVDAATIDSLPNLEIVSTYSVGYDNIDLHKCRHRAIPVTNTPNVLTDDVADVAIALALSLLCRICPRNSTWQFTPKLSGKAVGIVGLGRIGWAIAKRAEGFGCPVSYHSRSEKSETGYKYYSHIIDLAANSEVLFVACTLSEETRHIVNRGVIDALGPKGILINVGRGPHVDEPELVAALIEGRLGGAGLDVFENEPEVPEDLLGLENLVMTPHVGTDTLETCIAMGDLVIANLEAHFLGNPLFTPVL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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