Glyma15g01890 - SoyBase

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Report for Sequence Feature Glyma15g01890

Feature Type:	gene_model
Chromosome:	Gm15
Start:	1251085
stop:	1254182
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g01890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G45688	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42860.1); Has 258 Blast hits to 242 proteins in 39 species: Archae - 0; Bacteria - 11; Metazoa - 10; Fungi - 14; Plants - 198; Viruses - 17; Other Eukaryotes - 8 (source: NCBI BLink). \| chr1:17191502-17192870 FORWARD LENGTH=342	SoyBase	E_val: 8.00E-71	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0048767	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair elongation	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF03168	PFAM	Late embryogenesis abundant protein	JGI		ISS
UniRef100_B6TDG9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Harpin-induced protein n=1 Tax=Zea mays RepID=B6TDG9_MAIZE	SoyBase	E_val: 4.00E-119	ISS
UniRef100_C6T8K0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T8K0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g01890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g01890

Paralog	Evidence	Comments
Glyma13g43420	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g01890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g015800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g01890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g01890

Limit To All Plant Sequences

>Glyma15g01890.4   sequence type=transcript   gene model=Glyma15g01890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAAAAAAAAAAAGAAGCTGCCGACACTTGTTCCCGAGCCTGGTGAATTTGTGCAGCCAGTGAGGTTTGGTTCCGAGCCTTTCCAACACTATTAAGTATTATGCATTGCTCTTATTTACCCATCAAGCCTAAGGCACTTCACTTGTTCTGCATTGACCATAGCTTCTCTCTTTCTTTCCTAATTAATCCTTCCATGCAAACAAACGCTCTCTCTCATACTCATAGTGACACACACAGCTTAGTTTCGTTGTATTGTATGTGTCCTTTCTCAATTCTCATCATATATCTGTTCAAGTACCATTATCTTTCTATGTTGAGTGTCGGCATTTTTTGAGTTTCTCACTACCACTTGTTCTTTTTTTCTGATACATGCATATATATACGTCCAGATATACAGTCTATTCACTCAAATTCAGTGTCACAAGTTCTCAAGATTGTTGTCCGGCACTATCTGCAGCACCATTCAATTCTTCACTCTATATTGGATACACACACTTCTAGTATATACCAAGTGATTGATGATGTTGTCAGCAAAATCTGAATCGGATATCACAAGCTTAGCTCCATCTTCACCTTCAAGGTCACCAAAGCGCCCTGTGTACTATGTGCAAAGTCCTTCAAGGGATTCTCATGATGGGGACAAGTCATCTTCAATGCAGGCAACTCCAATATCAAACAGTCCTATGGAGTCTCCCTCACATCCTTCGTTTGGGCGTCACTCGAGGAACTCTTCTGCGAGCCGCTTTTCGGGGATTTTCCGGTCATCTTCTGGAAGGAAAGGGAGTAGGAAGAGGAATGATAAGGGGTGGCCTGAGTGTGATGTAATTCTGGAAGAAGGGTCTTATCATGAGTTTCAGGACAAGGGTTTCACAAGGCGCTTCCAGGCTTTGATTGCTGTCCTTACCTTTGTGGTTGTCTTCACCGTGTTTTGCTTGATCATTTGGGGTGCTAGCAGGCCTTACAAGGCAGAAATTGCTGTTAAGAGTTTGACGGTGCATAATTTCTATGTTGGAGAGGGTTCAGACTTCACGGGTGTCCTCACAAAAATGCTGACAGTTAATGGCACTTTACGCATGAGCATCTACAACCCTGCTACATTTTTTGGCATCCATGTGCACTCCACACCCATCAATCTAGTTTTCTCAGAAATCACTGTTGCTACTGGCGAGCTGAAGAAACACTATCAGCCAAGAAAAAGTCACCGCATTGTATCAGTGAACCTAGAGGGTACTAAGGTTCCCTTATATGGGGCTGGATCCACCATAACTGTATCCCAAACTGGTGTTGAAGTTCCACTCACATTGAACTTTGAAATCCGTTCGCGTGGAAATGTAGTGGGTAAACTGGTCAAGACAAGGCATCGTAAGGAAATCACTTGCCCCTTGGTCCTCAACTCTTCTCGATCAAAGCCTATCAAATTCAAAAAGAATTCATGCACCTATGATTGATCAGTGATCAATGTCCATTTTCATAGCTTATCTGTTTTGAGAGTGTAGCTTAAAATTGTATAATCTGTGTTTTGTGCCAAGCTTCAGATCATAAGGTCCATTTGGTTTGCAATAGAAGCAAAATATGCACTCGAAAAAATACTTCTTACATACAACTAGTCCCCCTGAATCCCCACTCTGTACTTTACTCTTATGAGCCTTGTGCAAATAAATGCATGTATGTAAATTTGTATATGCATATGCATAAAATGAAGAAACAATTCGCGAGTTCATTACTGAGGAAATTAATAGCCCTTTGCACGTCCCCATCATCCTTATTGAATGCTCGAGTGATATTGGGAAATTGTAGATTGATGGGTAATCATTTGA

>Glyma15g01890.5   sequence type=transcript   gene model=Glyma15g01890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAAAAAAAAAAAGAAGCTGCCGACACTTGTTCCCGAGCCTGGTGAATTTGTGCAGCCAGTGAGGTTTGGTTCCGAGCCTTTCCAACACTATTAAGTATTATGCATTGCTCTTATTTACCCATCAAGCCTAAGGCACTTCACTTGTTCTGCATTGACCATAGCTTCTCTCTTTCTTTCCTAATTAATCCTTCCATGCAAACAAACGCTCTCTCTCATACTCATAGTGACACACACAGCTTAGTTTCGTTGTATTATATACAGTCTATTCACTCAAATTCAGTGTCACAAGTTCTCAAGATTGTTGTCCGGCACTATCTGCAGCACCATTCAATTCTTCACTCTATATTGGATACACACACTTCTAGTATATACCAAGTGATTGATGATGTTGTCAGCAAAATCTGAATCGGATATCACAAGCTTAGCTCCATCTTCACCTTCAAGGTCACCAAAGCGCCCTGTGTACTATGTGCAAAGTCCTTCAAGGGATTCTCATGATGGGGACAAGTCATCTTCAATGCAGGCAACTCCAATATCAAACAGTCCTATGGAGTCTCCCTCACATCCTTCGTTTGGGCGTCACTCGAGGAACTCTTCTGCGAGCCGCTTTTCGGGGATTTTCCGGTCATCTTCTGGAAGGAAAGGGAGTAGGAAGAGGAATGATAAGGGGTGGCCTGAGTGTGATGTAATTCTGGAAGAAGGGTCTTATCATGAGTTTCAGGACAAGGGTTTCACAAGGCGCTTCCAGGCTTTGATTGCTGTCCTTACCTTTGTGGTTGTCTTCACCGTGTTTTGCTTGATCATTTGGGGTGCTAGCAGGCCTTACAAGGCAGAAATTGCTGTTAAGAGTTTGACGGTGCATAATTTCTATGTTGGAGAGGGTTCAGACTTCACGGGTGTCCTCACAAAAATGCTGACAGTTAATGGCACTTTACGCATGAGCATCTACAACCCTGCTACATTTTTTGGCATCCATGTGCACTCCACACCCATCAATCTAGTTTTCTCAGAAATCACTGTTGCTACTGGCGAGCTGAAGAAACACTATCAGCCAAGAAAAAGTCACCGCATTGTATCAGTGAACCTAGAGGGTACTAAGGTTCCCTTATATGGGGCTGGATCCACCATAACTGTATCCCAAACTGGTGTTGAAGTTCCACTCACATTGAACTTTGAAATCCGTTCGCGTGGAAATGTAGTGGGTAAACTGGTCAAGACAAGGCATCGTAAGGAAATCACTTGCCCCTTGGTCCTCAACTCTTCTCGATCAAAGCCTATCAAATTCAAAAAGAATTCATGCACCTATGATTGATCAGTGATCAATGTCCATTTTCATAGCTTATCTGTTTTGAGAGTGTAGCTTAAAATTGTATAATCTGTGTTTTGTGCCAAGCTTCAGATCATAAGGTCCATTTGGTTTGCAATAGAAGCAAAATATGCACTCGAAAAAATACTTCTTACATACAACTAGTCCCCCTGAATCCCCACTCTGTACTTTACTCTTATGAGCCTTGTGCAAATAAATGCATGTATGTAAATTTGTATATGCATATGCATAAAATGAAGAAACAATTCGCGAGTTCATTACTGAGGAAATTAATAGCCCTTTGCACGTCCCCATCATCCTTATTGAATGCTCGAGTGATATTGGGAAATTGTAGATTGATGGGTAATCATTTGA

Coding sequences of Glyma15g01890

Limit To All Plant Sequences

>Glyma15g01890.3   sequence type=CDS   gene model=Glyma15g01890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGTTGTCAGCAAAATCTGAATCGGATATCACAAGCTTAGCTCCATCTTCACCTTCAAGGTCACCAAAGCGCCCTGTGTACTATGTGCAAAGTCCTTCAAGGGATTCTCATGATGGGGACAAGTCATCTTCAATGCAGGCAACTCCAATATCAAACAGTCCTATGGAGTCTCCCTCACATCCTTCGTTTGGGCGTCACTCGAGGAACTCTTCTGCGAGCCGCTTTTCGGGGATTTTCCGGTCATCTTCTGGAAGGAAAGGGAGTAGGAAGAGGAATGATAAGGGGTGGCCTGAGTGTGATGTAATTCTGGAAGAAGGGTCTTATCATGAGTTTCAGGACAAGGGTTTCACAAGGCGCTTCCAGGCTTTGATTGCTGTCCTTACCTTTGTGGTTGTCTTCACCGTGTTTTGCTTGATCATTTGGGGTGCTAGCAGGCCTTACAAGGCAGAAATTGCTGTTAAGAGTTTGACGGTGCATAATTTCTATGTTGGAGAGGGTTCAGACTTCACGGGTGTCCTCACAAAAATGCTGACAGTTAATGGCACTTTACGCATGAGCATCTACAACCCTGCTACATTTTTTGGCATCCATGTGCACTCCACACCCATCAATCTAGTTTTCTCAGAAATCACTGTTGCTACTGGCGAGGTAACAATCCTTTCATGA

>Glyma15g01890.4   sequence type=CDS   gene model=Glyma15g01890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGTTGTCAGCAAAATCTGAATCGGATATCACAAGCTTAGCTCCATCTTCACCTTCAAGGTCACCAAAGCGCCCTGTGTACTATGTGCAAAGTCCTTCAAGGGATTCTCATGATGGGGACAAGTCATCTTCAATGCAGGCAACTCCAATATCAAACAGTCCTATGGAGTCTCCCTCACATCCTTCGTTTGGGCGTCACTCGAGGAACTCTTCTGCGAGCCGCTTTTCGGGGATTTTCCGGTCATCTTCTGGAAGGAAAGGGAGTAGGAAGAGGAATGATAAGGGGTGGCCTGAGTGTGATGTAATTCTGGAAGAAGGGTCTTATCATGAGTTTCAGGACAAGGGTTTCACAAGGCGCTTCCAGGCTTTGATTGCTGTCCTTACCTTTGTGGTTGTCTTCACCGTGTTTTGCTTGATCATTTGGGGTGCTAGCAGGCCTTACAAGGCAGAAATTGCTGTTAAGAGTTTGACGGTGCATAATTTCTATGTTGGAGAGGGTTCAGACTTCACGGGTGTCCTCACAAAAATGCTGACAGTTAATGGCACTTTACGCATGAGCATCTACAACCCTGCTACATTTTTTGGCATCCATGTGCACTCCACACCCATCAATCTAGTTTTCTCAGAAATCACTGTTGCTACTGGCGAGCTGAAGAAACACTATCAGCCAAGAAAAAGTCACCGCATTGTATCAGTGAACCTAGAGGGTACTAAGGTTCCCTTATATGGGGCTGGATCCACCATAACTGTATCCCAAACTGGTGTTGAAGTTCCACTCACATTGAACTTTGAAATCCGTTCGCGTGGAAATGTAGTGGGTAAACTGGTCAAGACAAGGCATCGTAAGGAAATCACTTGCCCCTTGGTCCTCAACTCTTCTCGATCAAAGCCTATCAAATTCAAAAAGAATTCATGCACCTATGATTGA

>Glyma15g01890.5   sequence type=CDS   gene model=Glyma15g01890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGTTGTCAGCAAAATCTGAATCGGATATCACAAGCTTAGCTCCATCTTCACCTTCAAGGTCACCAAAGCGCCCTGTGTACTATGTGCAAAGTCCTTCAAGGGATTCTCATGATGGGGACAAGTCATCTTCAATGCAGGCAACTCCAATATCAAACAGTCCTATGGAGTCTCCCTCACATCCTTCGTTTGGGCGTCACTCGAGGAACTCTTCTGCGAGCCGCTTTTCGGGGATTTTCCGGTCATCTTCTGGAAGGAAAGGGAGTAGGAAGAGGAATGATAAGGGGTGGCCTGAGTGTGATGTAATTCTGGAAGAAGGGTCTTATCATGAGTTTCAGGACAAGGGTTTCACAAGGCGCTTCCAGGCTTTGATTGCTGTCCTTACCTTTGTGGTTGTCTTCACCGTGTTTTGCTTGATCATTTGGGGTGCTAGCAGGCCTTACAAGGCAGAAATTGCTGTTAAGAGTTTGACGGTGCATAATTTCTATGTTGGAGAGGGTTCAGACTTCACGGGTGTCCTCACAAAAATGCTGACAGTTAATGGCACTTTACGCATGAGCATCTACAACCCTGCTACATTTTTTGGCATCCATGTGCACTCCACACCCATCAATCTAGTTTTCTCAGAAATCACTGTTGCTACTGGCGAGCTGAAGAAACACTATCAGCCAAGAAAAAGTCACCGCATTGTATCAGTGAACCTAGAGGGTACTAAGGTTCCCTTATATGGGGCTGGATCCACCATAACTGTATCCCAAACTGGTGTTGAAGTTCCACTCACATTGAACTTTGAAATCCGTTCGCGTGGAAATGTAGTGGGTAAACTGGTCAAGACAAGGCATCGTAAGGAAATCACTTGCCCCTTGGTCCTCAACTCTTCTCGATCAAAGCCTATCAAATTCAAAAAGAATTCATGCACCTATGATTGA

Predicted protein sequences of Glyma15g01890

Limit To All Plant Sequences

>Glyma15g01890.3   sequence type=predicted peptide   gene model=Glyma15g01890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMLSAKSESDITSLAPSSPSRSPKRPVYYVQSPSRDSHDGDKSSSMQATPISNSPMESPSHPSFGRHSRNSSASRFSGIFRSSSGRKGSRKRNDKGWPECDVILEEGSYHEFQDKGFTRRFQALIAVLTFVVVFTVFCLIIWGASRPYKAEIAVKSLTVHNFYVGEGSDFTGVLTKMLTVNGTLRMSIYNPATFFGIHVHSTPINLVFSEITVATGEVTILS*

>Glyma15g01890.4   sequence type=predicted peptide   gene model=Glyma15g01890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMLSAKSESDITSLAPSSPSRSPKRPVYYVQSPSRDSHDGDKSSSMQATPISNSPMESPSHPSFGRHSRNSSASRFSGIFRSSSGRKGSRKRNDKGWPECDVILEEGSYHEFQDKGFTRRFQALIAVLTFVVVFTVFCLIIWGASRPYKAEIAVKSLTVHNFYVGEGSDFTGVLTKMLTVNGTLRMSIYNPATFFGIHVHSTPINLVFSEITVATGELKKHYQPRKSHRIVSVNLEGTKVPLYGAGSTITVSQTGVEVPLTLNFEIRSRGNVVGKLVKTRHRKEITCPLVLNSSRSKPIKFKKNSCTYD*

>Glyma15g01890.5   sequence type=predicted peptide   gene model=Glyma15g01890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMLSAKSESDITSLAPSSPSRSPKRPVYYVQSPSRDSHDGDKSSSMQATPISNSPMESPSHPSFGRHSRNSSASRFSGIFRSSSGRKGSRKRNDKGWPECDVILEEGSYHEFQDKGFTRRFQALIAVLTFVVVFTVFCLIIWGASRPYKAEIAVKSLTVHNFYVGEGSDFTGVLTKMLTVNGTLRMSIYNPATFFGIHVHSTPINLVFSEITVATGELKKHYQPRKSHRIVSVNLEGTKVPLYGAGSTITVSQTGVEVPLTLNFEIRSRGNVVGKLVKTRHRKEITCPLVLNSSRSKPIKFKKNSCTYD*

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