Report for Sequence Feature Glyma15g01840
Feature Type: gene_model
Chromosome: Gm15
Start: 1209982
stop: 1215335
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g01840
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G16060 AT
Annotation by Michelle Graham. TAIR10: ATP binding microtubule motor family protein | chr3:5447503-5451196 FORWARD LENGTH=684
SoyBase E_val: 0 ISS
GO:0007018 GO-bp
Annotation by Michelle Graham. GO Biological Process: microtubule-based movement
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0003777 GO-mf
Annotation by Michelle Graham. GO Molecular Function: microtubule motor activity
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
KOG0246
KOG
Kinesin-like protein
JGI ISS
PTHR24115 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24115:SF79 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00225 PFAM
Kinesin motor domain
JGI ISS
UniRef100_G7II33 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: BY-inesin-like protein n=1 Tax=Medicago truncatula RepID=G7II33_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1MCP5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MCP5_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g01840
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma15g01840
Paralog Evidence Comments
Glyma13g43560 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g01840 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g015300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g01840
Coding sequences of Glyma15g01840
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g01840.1 sequence type=CDS gene model=Glyma15g01840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAACGGTGCAGGGAGACAGGGGCTGAGATCTGGTGCGGCGGGGGTGCACCACCAGCGCCAGTACTCCGATAACTTCCTCGACAGCTCATCCAACGGCAACAGGTGGCTCCAGTCGGCTGGCCTTCAACACCTTCAATCCTCCTCCAATCAACTTCCTCCGCTTCAGGACTATAACTTGTACGGCGGTGCACAAGGAGGAAGAATGTACCGGAATGCGCCAAGGAGCTTTAACGGAGGAAACGAGTATTATATGGAGCCTTCCACGCCTCCCGGTGGTTACCGTGCTTCGATGCAGAAAAAGAATGGCGAAGATTTGTCCGGTGATTTCAGCCCCGGCTTGTTGGATCTGCAGTCCTTCGACACCGAGCTTCTTCCTCCCGAGCTGCCAGTCTCCAATGCATATGATGCCAACTCCCTGTATCAACCTGGCCGGGGTAGAAGCTTTGATGACTCTGAAACTTACATGCTGAGCAAACAGACTGGCAGAGCTCGTGCTCCTGAAAACATATTGAAAAGTCTCCCTGCAGACAAAGAGAAATCTAATTCTGTAGCAAAGATTAAAGTGGTGGTTCGTAAAAGACCAATGAATAAGAAGGAATTAGCAAAAAATGAGGAGGACATCATAGAAACATATTCCAATTCTTTAACAGTGCACGAGACTAAACTGAAGGTTGACCTAACTCAGTATGTAGAAAAGCATGAATTTGTCTTTGATGCTGTTTTGAATGAAGAGGTTACAAATGATGAGGTGTATCGTGAAACAGTAGAGCCCATAGTTCCAATAATATTTGAACGCACTAAGGCAACTTGCTTTGCATACGGGCAAACAGGAAGTGGAAAAACTTACACAATGAAGCCACTGCCACTTAAAGCATCAAGGGACATCCTTAGATTGATGCATCATACTTACAGGAACCAGGGATTTCAATTGTTTGTGAGCTTCTTTGAAATATATGGTGGCAAGCTCTTTGATCTCCTTAATGATCGAAAAAAACTTTGCATGAGGGAGGATGGTAAGCAGCAAGTTTGCATTGTGGGTTTGCAAGAGTACCGAGTATCGGATGTGGAGAACATAAAAGACCTGATTGAGAAAGGAAATTCCACAAGAAGTACAGGCACCACAGGTGCAAATGAGGAATCATCACGGTCACATGCAATACTTCAGCTTGCTATCAAGAGGTCAGTTGATGGCAATGAATCCAAACCTCTCCGTTTGGTTGGCAAGCTCTCCTTCATAGATCTTGCTGGAAGCGAACGTGGAGCAGATACCACTGATAATGACAAACAGACAAGAATAGAAGGTGCTGAGATCAATAAGAGCTTACTTGCCCTAAAGGAATGCATAAGAGCTCTGGACAATGACCAAGGACACATCCCTTTCAGAGGCAGTAAACTGACTGAAGTTTTGAGGGATTCATTTGTTGGCAACTCCCGCACCGTTATGATTTCATGCATATCACCAAGCACTGGTTCATGTGAACATACTCTGAATACATTAAGATATGCTGACAGGGTAAAAAGCCTATCGAAAGGGAACAATTCAAAGAAGGATGTTTTATCGTCAAATTTCAACCTTAAAGAATCAAGTACAGTTCCCTTATCTTCTGTTACTGGGTCAGCCTATGAGGATCGCGTGACAGATGGATGGCCTGATGAAAATGAAGGGGATGATTTTAGCCCCTCTGAAGAGTATTACGAGCAGGTGAAACCACCATTGAAGAAAAATGGAAAGATGGAATCATATGCTACAACAGATGACAAATTGAAGAAACCCAGTGGTCAGATCAAATGGAAGGACCTCCCAAAAGTTGAACCTCAAACCACACATGCTGAGGATGATTTAAATGCCCTCCTACAGGAAGAAGAGGACCTTGTAAATGCTCACCGGACACAAGTAGAGGAGACCATGAACATTGTTAGAGAGGAGATGAACCTCTTGGTTGAAGCAGATCAACCAGGGAATCAGCTGGATGATTACATAACAAGACTAAACGCCATTCTTTCTCAGAAGGCTGCTGGCATCCTGCAGTTGCAAACCCGTTTAGCTCATTTTCAGAAACGTTTAAAGGAGCATAATGTTTTGGTTTCATCTACCGGTTACTAA
Predicted protein sequences of Glyma15g01840
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g01840.1 sequence type=predicted peptide gene model=Glyma15g01840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNGAGRQGLRSGAAGVHHQRQYSDNFLDSSSNGNRWLQSAGLQHLQSSSNQLPPLQDYNLYGGAQGGRMYRNAPRSFNGGNEYYMEPSTPPGGYRASMQKKNGEDLSGDFSPGLLDLQSFDTELLPPELPVSNAYDANSLYQPGRGRSFDDSETYMLSKQTGRARAPENILKSLPADKEKSNSVAKIKVVVRKRPMNKKELAKNEEDIIETYSNSLTVHETKLKVDLTQYVEKHEFVFDAVLNEEVTNDEVYRETVEPIVPIIFERTKATCFAYGQTGSGKTYTMKPLPLKASRDILRLMHHTYRNQGFQLFVSFFEIYGGKLFDLLNDRKKLCMREDGKQQVCIVGLQEYRVSDVENIKDLIEKGNSTRSTGTTGANEESSRSHAILQLAIKRSVDGNESKPLRLVGKLSFIDLAGSERGADTTDNDKQTRIEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSTGSCEHTLNTLRYADRVKSLSKGNNSKKDVLSSNFNLKESSTVPLSSVTGSAYEDRVTDGWPDENEGDDFSPSEEYYEQVKPPLKKNGKMESYATTDDKLKKPSGQIKWKDLPKVEPQTTHAEDDLNALLQEEEDLVNAHRTQVEETMNIVREEMNLLVEADQPGNQLDDYITRLNAILSQKAAGILQLQTRLAHFQKRLKEHNVLVSSTGY*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
