Glyma15g01830 - SoyBase

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Report for Sequence Feature Glyma15g01830

Feature Type:	gene_model
Chromosome:	Gm15
Start:	1204791
stop:	1207343
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g01830

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G79900	AT	Annotation by Michelle Graham. TAIR10: Mitochondrial substrate carrier family protein \| chr1:30052524-30053599 REVERSE LENGTH=296	SoyBase	E_val: 2.00E-141	ISS
GO:0006561	GO-bp	Annotation by Michelle Graham. GO Biological Process: proline biosynthetic process	SoyBase	N/A	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006839	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitochondrial transport	SoyBase	N/A	ISS
GO:0006972	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic response	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005743	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane	SoyBase	N/A	ISS
GO:0000064	GO-mf	Annotation by Michelle Graham. GO Molecular Function: L-ornithine transmembrane transporter activity	SoyBase	N/A	ISS
GO:0005290	GO-mf	Annotation by Michelle Graham. GO Molecular Function: L-histidine transmembrane transporter activity	SoyBase	N/A	ISS
GO:0005476	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carnitine:acyl carnitine antiporter activity	SoyBase	N/A	ISS
GO:0015181	GO-mf	Annotation by Michelle Graham. GO Molecular Function: arginine transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015189	GO-mf	Annotation by Michelle Graham. GO Molecular Function: L-lysine transmembrane transporter activity	SoyBase	N/A	ISS
KOG0762	KOG	Mitochondrial carrier protein	JGI		ISS
PTHR24089	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24089:SF127	Panther		JGI		ISS
PF00153	PFAM	Mitochondrial carrier protein	JGI		ISS
UniRef100_G7JJD6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial carnitine/acylcarnitine carrier protein n=1 Tax=Medicago truncatula RepID=G7JJD6_MEDTR	SoyBase	E_val: 5.00E-163	ISS
UniRef100_I1MCP4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MCP4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g01830

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g01830 not represented in the dataset	Glyma15g01830 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g01830

Paralog	Evidence	Comments
Glyma13g43570	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g01830 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g015200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g01830

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g01830

Limit To All Plant Sequences

>Glyma15g01830.3   sequence type=transcript   gene model=Glyma15g01830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAATACAAATTAAACCCGATCCAACAACACATCTCAGAATCAGGTAGATCTCTCCAACCCACTTCCCACTTATACTGTCTAGTTCTCCAACCTTCCAATCCAACAACACATCTTCACGTCTTTTCATCACACGTTGTTGTTTTCAGACTTAAAAAACGAGATCTTCCTCCTCCTAGGTTGTTGTTTGTTAACATTTCAAAACAGTTAGCAGAACACTATACTCTGATATCAGTCAAATCATATCACATCCAAGCTCCGTGACTAAGTTTGCCATGTTTTAATGATTCATTAGTCCGCGGCAGCAGGGGCAAAGAGTGACTTAGATCGAGGAAGGTGATAAGATAATGGAATTTTGGCCAGAATTTCTTGCTAGTAGTACGGGTAAAGAGTTTGTAGCTGGAGGATTTGGAGGCACTGCTGGTATAATCTCCGGTTACCCATTAGACACGCTCCGTGTGATGCAACAAAACTCCAACAATGGCTCTGCTTTCACCATCCTCAGAAATTTGGTGGCCAAGGAAGGACCAACTACTCTGTACCGTGGCATGGCTGCACCTTTGGCCTCTGTTACCTTTCAGAACGCTATGGTTTTCCAAATTTACGCAGTTCTCTCAAGGGCATTTAGCACGTCCGTTTCTGTTAACGACCCTCCTTCCTACAAGGGTGTTGCTTTAGGGGGATTTTGCTCCGGCGCTTTGCAGAGCATGTTGCTGTCTCCTGTTGAGTTACTTAAAATTCGCCTTCAGCTTCAGAACACAGGCCAATCCACAGAACCACAAAAGGGTCCCATAAGGGTTGCCAACAACATATGGAAAAGAGAGGGTCTTCGTGGCATTTATCGAGGACTTGGCATCACTATACTAAGAGATGCACCTGCGCATGGCCTTTACTTTTGGACATATGAATACGCGAGGGAGAAACTTCACCCAGGTTGCAGAAAAAGTTGTGGAGAGAGCTTGAATACTATGTTGGTATCAGGAGGATTGGCCGGGGTTGTGAGTTGGGTTTTCAGCTACCCTTTGGACGTTATAAAGACAAGATTGCAGGCTCAGACATTTTCTTCGCTGAAATACAAAGGCATTTTGGATTGTCTTCGGAAGAGCGTTGAAGAGGAAGGATACGTTGTTCTATGGCGGGGTTTAGGAACTGCGGTTGCTAGAGCGTTTGTTGTGAATGGTGCTATATTTTCTGCTTATGAGATCACTCTTAGGTGTCTGTTTGACAAATAAACAAATAATTCCTGGAGCATTCTGCATTCAAATGTAGGAAACATTCAAGGGCTGCAAATCAGGTTTTGAGGGAGACGTGACAATGGGATAACACTATGGTGTTTGATAACTTGATGTAATTGCCAAATGCCAAACATTTTTTTTTTTGGTGTAATACCATGGTGTTTTCTAAAAAAAAGTCTTTCTATTTAATCTCAAATTTGGAAGAAAAATAGTTTTATATGAACTATTTGATTATTTACAAGATT

Coding sequences of Glyma15g01830

Limit To All Plant Sequences

>Glyma15g01830.2   sequence type=CDS   gene model=Glyma15g01830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATTTTGGCCAGAATTTCTTGCTAGTAGTACGGGTAAAGAGTTTGTAGCTGGAGGATTTGGAGGCACTGCTGGTATAATCTCCGGTTACCCATTAGACACGCTCCGTGTGATGCAACAAAACTCCAACAATGGCTCTGCTTTCACCATCCTCAGAAATTTGGTGGCCAAGGAAGGACCAACTACTCTGTACCGTGGCATGGCTGCACCTTTGGCCTCTGTTACCTTTCAGAACGCTATGGTTTTCCAAATTTACGCAGTTCTCTCAAGGGCATTTAGCACGTCCGTTTCTGTTAACGACCCTCCTTCCTACAAGGGTGTTGCTTTAGGGGGATTTTGCTCCGGCGCTTTGCAGAGCATGTTGCTGTCTCCTGTTGAGTTACTTAAAATTCGCCTTCAGCTTCAGAACACAGGCCAATCCACAGAACCACAAAAGGGTCCCATAAGGGTTGCCAACAACATATGGAAAAGAGAGGGTCTTCGTGGCATTTATCGAGGACTTGGCATCACTATACTAAGAGATGCACCTGCGCATGGCCTTTACTTTTGGACATATGAATACGCGAGGGAGAAACTTCACCCAGGTTGCAGAAAAAGTTGTGGAGAGAGCTTGAATACTATGTTGGTATCAGGAGGATTGGCCGGGGTTGTGAGTTGGGTTTTCAGCTACCCTTTGGACGTTATAAAGACAAGATTGCAGGCTCAGACATTTTCTTCGCTGAAATACAAAGGCATTTTGGATTGTCTTCGGAAGAGCGTTGAAGAGGAAGGATACGTTGTTCTATGGCGGGGTTTAGGAACTGCGGTTGCTAGAGCGTTTGTTGTGAATGGTGCTATATTTTCTGCTTATGAGATCACTCTTAGGTGTCTGTTTGACAAATAA

>Glyma15g01830.3   sequence type=CDS   gene model=Glyma15g01830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATTTTGGCCAGAATTTCTTGCTAGTAGTACGGGTAAAGAGTTTGTAGCTGGAGGATTTGGAGGCACTGCTGGTATAATCTCCGGTTACCCATTAGACACGCTCCGTGTGATGCAACAAAACTCCAACAATGGCTCTGCTTTCACCATCCTCAGAAATTTGGTGGCCAAGGAAGGACCAACTACTCTGTACCGTGGCATGGCTGCACCTTTGGCCTCTGTTACCTTTCAGAACGCTATGGTTTTCCAAATTTACGCAGTTCTCTCAAGGGCATTTAGCACGTCCGTTTCTGTTAACGACCCTCCTTCCTACAAGGGTGTTGCTTTAGGGGGATTTTGCTCCGGCGCTTTGCAGAGCATGTTGCTGTCTCCTGTTGAGTTACTTAAAATTCGCCTTCAGCTTCAGAACACAGGCCAATCCACAGAACCACAAAAGGGTCCCATAAGGGTTGCCAACAACATATGGAAAAGAGAGGGTCTTCGTGGCATTTATCGAGGACTTGGCATCACTATACTAAGAGATGCACCTGCGCATGGCCTTTACTTTTGGACATATGAATACGCGAGGGAGAAACTTCACCCAGGTTGCAGAAAAAGTTGTGGAGAGAGCTTGAATACTATGTTGGTATCAGGAGGATTGGCCGGGGTTGTGAGTTGGGTTTTCAGCTACCCTTTGGACGTTATAAAGACAAGATTGCAGGCTCAGACATTTTCTTCGCTGAAATACAAAGGCATTTTGGATTGTCTTCGGAAGAGCGTTGAAGAGGAAGGATACGTTGTTCTATGGCGGGGTTTAGGAACTGCGGTTGCTAGAGCGTTTGTTGTGAATGGTGCTATATTTTCTGCTTATGAGATCACTCTTAGGTGTCTGTTTGACAAATAA

Predicted protein sequences of Glyma15g01830

Limit To All Plant Sequences

>Glyma15g01830.2   sequence type=predicted peptide   gene model=Glyma15g01830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEFWPEFLASSTGKEFVAGGFGGTAGIISGYPLDTLRVMQQNSNNGSAFTILRNLVAKEGPTTLYRGMAAPLASVTFQNAMVFQIYAVLSRAFSTSVSVNDPPSYKGVALGGFCSGALQSMLLSPVELLKIRLQLQNTGQSTEPQKGPIRVANNIWKREGLRGIYRGLGITILRDAPAHGLYFWTYEYAREKLHPGCRKSCGESLNTMLVSGGLAGVVSWVFSYPLDVIKTRLQAQTFSSLKYKGILDCLRKSVEEEGYVVLWRGLGTAVARAFVVNGAIFSAYEITLRCLFDK*

>Glyma15g01830.3   sequence type=predicted peptide   gene model=Glyma15g01830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEFWPEFLASSTGKEFVAGGFGGTAGIISGYPLDTLRVMQQNSNNGSAFTILRNLVAKEGPTTLYRGMAAPLASVTFQNAMVFQIYAVLSRAFSTSVSVNDPPSYKGVALGGFCSGALQSMLLSPVELLKIRLQLQNTGQSTEPQKGPIRVANNIWKREGLRGIYRGLGITILRDAPAHGLYFWTYEYAREKLHPGCRKSCGESLNTMLVSGGLAGVVSWVFSYPLDVIKTRLQAQTFSSLKYKGILDCLRKSVEEEGYVVLWRGLGTAVARAFVVNGAIFSAYEITLRCLFDK*

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